Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1703 ATGAATTGGTTTGTGGTTTGTCAGTCTCGTTTGTGGGTAGTGACCATTGTGTTCTACACATGCATTTTGATCCCAGTGATGAGACTCAAGAGAGCACTTGCAACCATATTTGGGTTCTCTTGCGAGACCAAAGGCATGTCCATGGAGATGGAGTTCCCAGAAATTCCTTCATTGCCCGTGGCAAGGTACGAGGATTTGAAGGGAGAGAGAGAAGAGATAATTTGCTCCATTTGCTTGGTGGAGTTTGAGGGAGAAGATGCAGTGACCAAACTTGGAAGATGTGGCCACGTTTTCCATCTCAGTTGCATTGACCAATGGATACTCCGCAATCATTTCTCTTGCCCACTCTGTAGGTCCTTTTTGTTTGAGGAAACTCATCGATCTTTAAAATGTGTCTAG 399 0.4461 MNWFVVCQSRLWVVTIVFYTCILIPVMRLKRALATIFGFSCETKGMSMEMEFPEIPSLPVARYEDLKGEREEIICSICLVEFEGEDAVTKLGRCGHVFHLSCIDQWILRNHFSCPLCRSFLFEETHRSLKCV 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1703 132 SUPERFAMILY RING/U-box 55 124 - -
Aed1g1703 132 SMART ring_2 75 117 IPR001841 -
Aed1g1703 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 128 IPR013083 -
Aed1g1703 132 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 122 - -
Aed1g1703 132 ProSiteProfiles Zinc finger RING-type profile. 75 118 IPR001841 -
Aed1g1703 132 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 122 - -
Aed1g1703 132 Pfam Ring finger domain 75 118 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1703 Aed-Chr1 14850997 14851395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1703 8 125 C3H Transcription Factor Family AT4G38140 44.068 5.57e-27 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1703 - - pvu:PHAVU_007G012000g 179.489