Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1691 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTGAGAGCTGAATTAGCCCAACAACAAGAAAACCAAAGCGCTGCTCAACTCCCTTCATCTTCTATTACTAATAACAACAACTCTCTCAAAACTCTTCTGGACTCTGCCACTCCCAGATTCTCCAAGAGAGACAAGCGAAGAGAGCTTCGATCCTTGCAGCCGCCTCCTCCACAAGATGCCAGCAAGGATACTGAGACAAAGGGTTCACCCAAGAAAAAGAGAAAGAGGAAGCTAGAGGACGCTGACGTGTCACCTAATGGAGTTTCCGACACACCAAAGAACAAGAAGAAGAGCAAGAAGAAGAAGAAACAGAAGAACAAGAAGAAACCCATAACGGCGGAAGAAAACGGTTCTAATGGTGAAGGAGGGGAATTGCCCGAGGCCACAGAGTTAACCAAGACCAATACAACCACCAGTCAAGAAAATGGTGATGCTCCTACTAAGGTTTATGTTGGAGGAATTCCCTACTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATTACTGAAGTTGATTGCATGACTTTTCCTGAAACTGTCAAGTTTAGAGGGATTGCCATTATTGATTTCAAGACTGAAGCAGCAGCCAAAAGAGCATTGGCTCTTGATGGATCGGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAACAACTCGAGCTAATAAAGCATCAGACTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAATATATGTTGGAAATTTGTCGTGGGATATGACAGAGGAAGAACTGAGGAAATTCTTCAATAATTGTGAGATAACATCGCTACGATTCGGCATGGACAAGGAGACAGGAGAGTTTCGAGGGTATGCCCATGTGGATTTCAGTGATAGTCAGTCACTGAAAACAGCACTTTCATTGGACCAAAATGTTTTGTCTGGGAGACCTGTCAGGATAAGTTGTGCGGTTCCTTTGAAGAATAAAACAGGAACTCATACAAGCTCCACGGTTAATGGAGCTAATGGTGATAAATCAAGTTCCACAGGAAGTGGCAAGATGAATGGAGCTGATGGTGATAAATCAACTTCTACAGGAAGTGGCAAGATGAGTGGAGCTGATGGTGATAAACCAAGTACCACAGGAAGTGGCAAGATGAAGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATATGTTTTCTGAATGCCCAAAGAAACAAACAGTTGCTGCAACTACAACTTAA 1260 0.4278 MVLSNKKLKLKLRAELAQQQENQSAAQLPSSSITNNNNSLKTLLDSATPRFSKRDKRRELRSLQPPPPQDASKDTETKGSPKKKRKRKLEDADVSPNGVSDTPKNKKKSKKKKKQKNKKKPITAEENGSNGEGGELPEATELTKTNTTTSQENGDAPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETVKFRGIAIIDFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRANKASDFAPEILEGYNRIYVGNLSWDMTEEELRKFFNNCEITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALSLDQNVLSGRPVRISCAVPLKNKTGTHTSSTVNGANGDKSSSTGSGKMNGADGDKSTSTGSGKMSGADGDKPSTTGSGKMKRRTCYECGEKGHMFSECPKKQTVAATTT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1691 419 MobiDBLite consensus disorder prediction 17 46 - -
Aed1g1691 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 226 IPR000504 GO:0003723
Aed1g1691 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 322 IPR000504 GO:0003723
Aed1g1691 419 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 57 416 - -
Aed1g1691 419 Gene3D - 365 418 - -
Aed1g1691 419 Gene3D - 97 243 IPR012677 -
Aed1g1691 419 SMART c2hcfinal6 394 410 IPR001878 GO:0003676|GO:0008270
Aed1g1691 419 SUPERFAMILY RNA-binding domain, RBD 247 338 IPR035979 GO:0003676
Aed1g1691 419 SUPERFAMILY Retrovirus zinc finger-like domains 379 413 IPR036875 GO:0003676|GO:0008270
Aed1g1691 419 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 57 416 - -
Aed1g1691 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 329 IPR000504 GO:0003723
Aed1g1691 419 SUPERFAMILY RNA-binding domain, RBD 149 236 IPR035979 GO:0003676
Aed1g1691 419 MobiDBLite consensus disorder prediction 333 382 - -
Aed1g1691 419 MobiDBLite consensus disorder prediction 333 392 - -
Aed1g1691 419 MobiDBLite consensus disorder prediction 48 63 - -
Aed1g1691 419 CDD RRM1_PHIP1 160 231 IPR034361 -
Aed1g1691 419 MobiDBLite consensus disorder prediction 17 138 - -
Aed1g1691 419 ProSiteProfiles Zinc finger CCHC-type profile. 395 410 IPR001878 GO:0003676|GO:0008270
Aed1g1691 419 SMART rrm1_1 159 231 IPR000504 GO:0003723
Aed1g1691 419 SMART rrm1_1 254 325 IPR000504 GO:0003723
Aed1g1691 419 CDD RRM2_PHIP1 254 325 IPR034362 -
Aed1g1691 419 Pfam Zinc knuckle 393 410 IPR001878 GO:0003676|GO:0008270
Aed1g1691 419 Gene3D - 249 338 IPR012677 -
Aed1g1691 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1691 Aed-Chr1 14777074 14779177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1691 127 327 Eukaryotic Initiation Factors Gene Family AT3G16380 29.245 8.88e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1691 - - gmx:100814693 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1691 1 14777074 14779177 Aed1g1691 1 14777074 14779177 ECH