Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1669 ATGGCGGGGATGAAGGTGCAGACGCTACCATACGGCGATGTTGATTCTAACTTGAGGGCCTTGGCCGGTAAAGCCGAGGGTTTCGGCCGCCACGCCATCGGTGGCCTCCACGATGATGGTCCTGGGTCCCTTCGCGAAGGATGTCGCAGAAAGGAACCGTTATGGATCGTGTTTGAGGTTTCTGGCACGCTTCATCTCTCATCGTACCTTAGCGTGTCTTCGTATAAGACAATCGATGGCAGAGGGCAGAGAGTGAAATTGACCGGGAAGGGTTTGAGGCTGAAAGAATGCGAACAAATAATCGTGTGCAACCTCGAATTTGAGGGTGGTAGGGGTCACGATGTCGATGGCATTCAGATAAAACCTAATTCCAGGCACATTTGGATTGATCGATGCACCCTTCGCGATTACGATGATGGCCTTATTGACATTACAAGACAGAGCACCGATATAACTGTTTCTAGGTGTTTCTTTGGGAACCATGACAAGACCATGCTCATTGGAGCTGATCCCACTCACGTTGGCGATAGATGCATTAGGGTCACCATTCACCATTGTTTCTTTGATGGAACAAATCAGAGACAACCTCGTGTCCGATTTGGAAAAGTTCATCTCTACAACAATTACACCAGAAACTGGACCGTATATGCTGTTTGCGCTAGTGTCGAATCCCAGATATACTCTCAATGTAACGTATATGAAGCTGGAACTAAGAAAAAGACTTTTGAATTTTATTCTGAGAAGGCGGCAGATAAGGAAGAGAAGAAGAGTGGGTTGATAGTATCAGAAGGAGACATGTTTCTGAATGGTGCTGAGCAATGCTTGGTTACAGAAAACAGAGGAGAGACGATGTTCCATCCAACCGAATATTACCCAACATGGACTATGGAAGCAGCTGCACATTCTCTCAGAGAGATCCTCCAATTTTGTACAGGTTGGCAATCCATTTCTAGGCCACTAGATCAAATGGTCCCTCCATAA 981 0.4648 MAGMKVQTLPYGDVDSNLRALAGKAEGFGRHAIGGLHDDGPGSLREGCRRKEPLWIVFEVSGTLHLSSYLSVSSYKTIDGRGQRVKLTGKGLRLKECEQIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCTLRDYDDGLIDITRQSTDITVSRCFFGNHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTNQRQPRVRFGKVHLYNNYTRNWTVYAVCASVESQIYSQCNVYEAGTKKKTFEFYSEKAADKEEKKSGLIVSEGDMFLNGAEQCLVTENRGETMFHPTEYYPTWTMEAAAHSLREILQFCTGWQSISRPLDQMVPP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1669 326 Gene3D - 10 310 IPR012334 -
Aed1g1669 326 PANTHER PECTATE LYASE 4 320 - -
Aed1g1669 326 PRINTS Pollen allergen Amb family signature 33 58 IPR018082 -
Aed1g1669 326 PRINTS Pollen allergen Amb family signature 216 235 IPR018082 -
Aed1g1669 326 PRINTS Pollen allergen Amb family signature 194 213 IPR018082 -
Aed1g1669 326 SMART amb_all 61 239 IPR002022 -
Aed1g1669 326 PANTHER PECTATE LYASE 18-RELATED 4 320 IPR045032 GO:0030570
Aed1g1669 326 SUPERFAMILY Pectin lyase-like 22 314 IPR011050 -
Aed1g1669 326 Pfam Pectate lyase 70 233 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1669 Aed-Chr1 14665837 14667102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1669 38 325 Polysaccharide Lyase AT3G55140 79.167 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1669 K01728 - gmx:100802068 594.349