Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed1g1667 | ATGATCTCAAACTCGGACCCTGTAAAACCAGTCACGGAAGCCACGGCAACCGCCGCCGCCGCCTCCTCCGTCGCAACAACCACCTCCTCTTCCAATGAAGATCAGCCTGCACCACCGCCGGCACCAAACATTGTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAGCTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGGTCATCGATGGAGGATTTCTTTGAGACCAGAATATCAGAGGTTGATGGTCAGACAGTTGCATTTTTTGGTGTTTTCGATGGTCATGGAGGTTCCCGGACTGCAGAATATCTGAAAAATAATCTGTTCAAGAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAGTTGAAGCATTTAAACAGACAGATGTTGACTACCTCAATGAGGAAAAGGGGCATCAAAGGGATGCTGGGTCAACTGCATCAACAGCTATGTTGTTGGGAGACCGGATTGTTGTTGCAAATGTTGGTGATTCCAGAGTGGTTGCATGTAGAGCTGGTTCAGCTGTTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCAAAGGATTGAAGAGGCTGGGGGATTCATAATTTGGGCTGGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAGACAAACTTCTTAAGCCATATGTTGTTGCTGACCCAGAAATTCAGGAGGAAGAAATTGAGGCTGTCGATTTTATTATAATTGCTAGTGATGGCCTTTGGAATGTCATATCAAACAAGGAGGCCGTGTCTATAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGAGAACTTATAAAAGAAGCTTATGCTCGAGGAAGCTCAGATAACATAACTTGTGTTGTTGTTCGATTTGATCTATCCTGA | 963 | 0.4507 | MISNSDPVKPVTEATATAAAASSVATTTSSSNEDQPAPPPAPNIVMSSKDHDSLFSGGGISFLSGSRNGRFSYGYSSFKGKRSSMEDFFETRISEVDGQTVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPNFIKDTKTAIVEAFKQTDVDYLNEEKGHQRDAGSTASTAMLLGDRIVVANVGDSRVVACRAGSAVPLSIDHKPDRSDERQRIEEAGGFIIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIEAVDFIIIASDGLWNVISNKEAVSIVQNITDAEVASRELIKEAYARGSSDNITCVVVRFDLS | 320 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed1g1667 | 320 | ProSitePatterns | PPM-type phosphatase domain signature. | 103 | 111 | IPR000222 | GO:0043169 | |
| Aed1g1667 | 320 | CDD | PP2Cc | 71 | 317 | IPR001932 | - | |
| Aed1g1667 | 320 | SMART | PP2C_SIG_2 | 84 | 317 | IPR001932 | - | |
| Aed1g1667 | 320 | Pfam | Protein phosphatase 2C | 73 | 310 | IPR001932 | - | |
| Aed1g1667 | 320 | SMART | PP2C_4 | 61 | 315 | IPR001932 | - | |
| Aed1g1667 | 320 | PANTHER | PROTEIN PHOSPHATASE 2C 11-RELATED | 37 | 320 | - | - | |
| Aed1g1667 | 320 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Aed1g1667 | 320 | Gene3D | - | 65 | 319 | IPR036457 | - | |
| Aed1g1667 | 320 | ProSiteProfiles | PPM-type phosphatase domain profile. | 72 | 317 | IPR001932 | - | |
| Aed1g1667 | 320 | PANTHER | ALPHABET, ISOFORM E-RELATED | 37 | 320 | - | - | |
| Aed1g1667 | 320 | SUPERFAMILY | PP2C-like | 65 | 318 | IPR036457 | - | |
| Aed1g1667 | 320 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed1g1667 | Aed-Chr1 | 14649479 | 14654404 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed1g1667 | 28 | 320 | PP2C-type Phosphatase Gene Family | AT1G43900 | 67.722 | 2.53e-158 | 445 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed1g1667 | K17506 | - | gmx:100776867 | 578.17 |