Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1658 ATGTCATCTCGCATTGTTGCGGATAATGCATTACCTGTCACCACCACCACTCCCTATTTCGACCTAATGGAACTCGACGACCTCACGTGCCGCCCTGCCGCCGACATGCCCACGCTTGGCCAACTCCTTAAGCACGTCGGAGACGCCAGGAAGGAAGCCACCGGTGACGGAAGCGAGACGCCGCTGCACCATGTGCTCGACATCGCTGAGCCTCGCTCGCTGCCTTTCGTCCTCTCCTTCAGCAACCTCACCTACAGCGTCAAGTCTCGCCGCAAAATAAGCCTCTCCTCATTCCTCCCCCGCCGTAGCAACCGCCTGGGCGCGGTGGCGGAGGCGCCAGTTGTTGGTGAGAGCATGTTCAGGAGGACAAAGACGCTGCTGAACGACATCTCCGGCGAGGCGCGCGACGGCGAGATCATGGCGGTCCTCGGCGCCAGCGGTTCGGGAAAGTCAACGCTAATCGACGCACTGGCTAACAGGATTGCCAAGGGAAGTCTAAAAGGCACGGTGGCGCTGAACGGCGAAGCGCTGGAATCACGTCTACTGAAGGTGATTTCGGCGTACGTGATGCAAGACGACCTCCTCTTCCCAATGCTCACCGTGGAAGAGACTCTCATGTTCGCCGCGGAGTTCCGACTTCCTCGCACGCTCTCCAAGTCCAAGAAAAGCGCACGCGTGCAGGCACTCATCGACCAGCTAGGTCTCCGTAACGCCGCAAAAACGGTCATCGGAGACGAAGGCCACCGCGGAGTCTCCGGCGGAGAGAGGCGGAGGGTGTCGATCGGAACCGACATAATCCACGACCCGATCATTCTATTCCTCGACGAGCCAACCTCGGGACTTGACTCGACGAGCGCGTACATGGTGGTGAAGGTGCTTCAGAGAATCGCACAGAGCGGAAGCATCGTGATCATGTCCATTCACCAACCGAGTTACCGAATCCTAGGGCTTCTGGACCGCATGATCTTCTTATCACGCGGCCAAACAGTATACAGCGGTTCACCCTCGCAGTTACCGGTTTTCTTTTCGGAGTTCGGTCATCCGATTCCAGAAACCGATAACAGAACGGAATTCGCTTTGGACCTGATTCGCGAACTGGAAGGCTCCCCCGGGGGAACGAAAAGCTTGGTCGAGTTCAACAAATCATGGCAGAGCATGACGAAGCACAATCAAACGACGACGACAGTGGACGAGGGAGAACGAAACGGGTTGTCGTTGAAGGAAGCAATAAGCGCCAGCATTTCGCGAGGGAAGCTGGTTTCCGGCGCTACAAACACAAACCCGAACCCGTCGTCGATGGTGCCAACTTTTGCGAATCCGTTTTGGAGTGAGATGGCGACGCTGTCGAAAAGGTCGTTTTTGAATTCGAGGAGAATGCCGGAGTTGTTTGGGATTAGATTGGGTGCGGTGATGGTGACGGGGTTTATACTAGCCACCATGTTCTGGCAACTGGATAACTCCCCAAAAGGAGTGCAAGAGAGGCTGGGATTCTTCGCGTTCGCGATGTCAACAACTTTTTACACTACCGCAGACGCGCTTCCAGTGTTTCTCCAAGAGCGCTACATTTTCATGAGGGAAACTGCATACAACGCATATCGCAGGTTGTCGTATTTGGTATCGCATGCGCTCGTGGCGTTGCCCTCGTTAGCGTTTCTATCGCTGGCGTTCGCGGCAGCAACGTTTTGGGCCGTGGGCCTGGACGGTGGAATTTGGGGGTTTGTGTTTTACTTTCTGATAATATTCGCATCGTTTTGGGCCGGGAACTCATTCGTGTCGTTCCTATCGGGGGTGGTGCCGCACGTGATGCTGGGTTACACGATAGTGGTAGCAATTCTGGCGTATTTTTTGCTGTTCAGTGGGTTCTTCATAAACAGGGACAGGATACCGAGTTACTGGATATGGTTCCACTACATGTCGTTGGTGAAATACCCGTACGAAGCGGTGTTGCAGAACGAGTTCGAGGATCCGGTGAAGTGCTTCGTGAGAGGGGTGCAGATATTCGATAACACGCCACTTGGGTCGGTGCCGGAGCCTCTCAAGTTGAAGCTGTTGGATAGCATGAGCAACACTCTGGGGATGAAGATCACGAGCTCCACATGTTTGACGACGGGTGCGGATATATTGCAACAAAACGGGGTCACTGATTTGAACAAGTGGAACTGCTTCTGGATAACTGTCGCTTGGGGATTCTTCTTTAGGTTCCTCTTTTACTTGTCATTGTTGATAGGCAGCAAGAACAAGAGGACCTGA 2250 0.5431 MSSRIVADNALPVTTTTPYFDLMELDDLTCRPAADMPTLGQLLKHVGDARKEATGDGSETPLHHVLDIAEPRSLPFVLSFSNLTYSVKSRRKISLSSFLPRRSNRLGAVAEAPVVGESMFRRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGEALESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKSARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPVFFSEFGHPIPETDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKHNQTTTTVDEGERNGLSLKEAISASISRGKLVSGATNTNPNPSSMVPTFANPFWSEMATLSKRSFLNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRLSYLVSHALVALPSLAFLSLAFAAATFWAVGLDGGIWGFVFYFLIIFASFWAGNSFVSFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYMSLVKYPYEAVLQNEFEDPVKCFVRGVQIFDNTPLGSVPEPLKLKLLDSMSNTLGMKITSSTCLTTGADILQQNGVTDLNKWNCFWITVAWGFFFRFLFYLSLLIGSKNKRT 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1658 749 ProSitePatterns ABC transporters family signature. 251 265 IPR017871 GO:0005524
Aed1g1658 749 Pfam ABC-2 type transporter 308 367 IPR043926 GO:0140359
Aed1g1658 749 PANTHER ABC TRANSPORTER G FAMILY MEMBER 6-LIKE 13 743 - -
Aed1g1658 749 Gene3D - 117 340 IPR027417 -
Aed1g1658 749 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 104 351 IPR003439 GO:0005524
Aed1g1658 749 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 743 - -
Aed1g1658 749 Pfam ABC-2 type transporter 446 653 IPR013525 GO:0016020|GO:0140359
Aed1g1658 749 Pfam ABC transporter 127 279 IPR003439 GO:0005524
Aed1g1658 749 SMART AAA_5 136 328 IPR003593 -
Aed1g1658 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1658 Aed-Chr1 14594161 14596410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1658 126 338 Calmodulin-binding Proteins AT2G36910 29.545 1.34e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1658 K05681 - gmx:100803658 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1658 1 14594161 14596410 Aed1g1658 1 14594161 14596410 ECH