Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1641 ATGGCAGCATGTTCGTCTTCTACAGTGATTGGGGTGATTGATGAGAAATTTGAAAACGGTTATATAGTTAGTGTGAGAATGGGTTCGGAGGAACTGAAAGGCGTACTTTATCATAGTCCTCCAGAGAACAACCACCGTGGACGTCTACGAAGGAGGAGATCAGAAGTGAAAAAGAGAGATCCTGCTCAACCAAAACCTAAAAGAAGTGGCTACAATTTCTTCTTTGCTGAACAACATGCAGTACTCAAGCCACATTTCCAAGGAAAGGAGACAGATATTGGTAGAAGGATCGGTGAGCTTTGGACTAAGTTGTCAGAGTCAGAAAAACTGGCGTACCAGGAGATGGGTACAAAAGATAAAGAGAGATACAGAACTGAAATGGAAGAATATGAGGAGAAACAAAAGAAGGAGCAAGTCGTCATGGATGCTGTGCCACTTCGACAATGGCCTTCTCAATCGGATGTAGACATCTTCCATGCTGCTGCCATTCAAATGAATAATGAAGCTGAGCCTGAGGGTACTGCTGTTGTTGGAATTTGCATTCCATTCAACTCCAAGGGGGGTGTTTGA 570 0.4351 MAACSSSTVIGVIDEKFENGYIVSVRMGSEELKGVLYHSPPENNHRGRLRRRRSEVKKRDPAQPKPKRSGYNFFFAEQHAVLKPHFQGKETDIGRRIGELWTKLSESEKLAYQEMGTKDKERYRTEMEEYEEKQKKEQVVMDAVPLRQWPSQSDVDIFHAAAIQMNNEAEPEGTAVVGICIPFNSKGGV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1641 189 Coils Coil 113 140 - -
Aed1g1641 189 SMART hmgende2 63 132 IPR009071 -
Aed1g1641 189 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 168 - -
Aed1g1641 189 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 64 131 IPR009071 -
Aed1g1641 189 MobiDBLite consensus disorder prediction 36 69 - -
Aed1g1641 189 CDD HMGB-UBF_HMG-box 64 124 - -
Aed1g1641 189 Gene3D High mobility group box domain 49 144 IPR036910 -
Aed1g1641 189 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 168 - -
Aed1g1641 189 SUPERFAMILY HMG-box 52 137 IPR036910 -
Aed1g1641 189 Pfam HMG (high mobility group) box 64 131 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1641 Aed-Chr1 14490677 14491304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1641 2 160 ARID Transcription Factor Family AT1G04880 47.090 4.34e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aed1g1641 HMG_box 2.4e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1641 - - gmx:100820147 189.504