Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1640 ATGGCATCAACATCTTGCGTTGGTGGTAACAGTTCATCACCCATGAAAGATGCAGCTTCTTCGAGCTATCACGCATATCCTCTTCCTCTAGCAAAATATGAGGAGATTGTGAACAATTCCCGGCTCTTCATGTTGACCTTGGAGCAACTTCACACTGCTATGGGTACCAAGTTCATGATTCCCATCGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTTACTTCTCGAGGAGGGATTGTAAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGCTTCATTGCTCTACCATTATGAACAAATCTACTTTTTTAAAATCCGTAAATGGGACCCTACTGCTCCTGATGTTTTACAGAATCAATCACCCCTGCCAGTTCCTCCTCCAAAAATGCAGTTTCCGCAGCCTTTGTCAGAAATTCAATCAGCCATGCTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCATCATCGTCGGCAGGTTCTCCAGTAGTTGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGCGTGCTTTATCAAGCTCCACAAAACTCTGTTTTGTCAGCATCCCATCTTAGTGCCTCAGCAAATAACAACAATGCTTCTGCTTCATTGGGTGTCCATCGTCGACGACGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGCGGGTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAGCTACTTCACCATGGGAAGGACAGAGAGATTAGTAGGATGATTGGTGAGCTTTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAGGCCATGAAGGATAAGGAGAGGTACAGAGCAGAAATGGAGGATTATCGGGAGAAACAGAAGATGGGCCAAGTTATCAGTGATGCTGTGCCGCTTCAACAACGACTTCCTGAACCAGATACAGACACGTTGGATGTTGACATAAAAATTGATGAAGCTGAGGGAGATTCCCCTCAAACTCCAGAGGAGAGCAGTTCTGGTGGAAGTGACTATGAGGATTTTAATAAAACCGGAGAGAGAGGTTTTGATGTGGACGCATTTCCTGTTATAGGAATTGGCGCCGCACAAACAAGCTATTTGGGTTCAGAAGATAAGTCATCTTCTAAGGGGCCAGTATAG 1290 0.431 MASTSCVGGNSSSPMKDAASSSYHAYPLPLAKYEEIVNNSRLFMLTLEQLHTAMGTKFMIPIVGGRELDLHRLFVEVTSRGGIVKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYFFKIRKWDPTAPDVLQNQSPLPVPPPKMQFPQPLSEIQSAMLQQSNVNAAKLPEAMASSSAGSPVVGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNSVLSASHLSASANNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKQKMGQVISDAVPLQQRLPEPDTDTLDVDIKIDEAEGDSPQTPEESSSGGSDYEDFNKTGERGFDVDAFPVIGIGAAQTSYLGSEDKSSSKGPV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1640 429 SUPERFAMILY ARID-like 36 131 IPR036431 GO:0003677
Aed1g1640 429 Pfam ARID/BRIGHT DNA binding domain 41 124 IPR001606 GO:0003677
Aed1g1640 429 PRINTS High mobility group (HMG1/HMG2) protein signature 318 338 - -
Aed1g1640 429 PRINTS High mobility group (HMG1/HMG2) protein signature 299 318 - -
Aed1g1640 429 SMART bright_3 38 129 IPR001606 GO:0003677
Aed1g1640 429 MobiDBLite consensus disorder prediction 357 373 - -
Aed1g1640 429 MobiDBLite consensus disorder prediction 238 274 - -
Aed1g1640 429 CDD ARID_HMGB9-like 39 124 IPR045303 GO:0003677
Aed1g1640 429 Gene3D High mobility group box domain 251 346 IPR036910 -
Aed1g1640 429 CDD HMGB-UBF_HMG-box 267 331 - -
Aed1g1640 429 Gene3D - 13 135 IPR036431 GO:0003677
Aed1g1640 429 MobiDBLite consensus disorder prediction 247 261 - -
Aed1g1640 429 SMART ARID_2 34 124 - -
Aed1g1640 429 Pfam HMG (high mobility group) box 267 334 IPR009071 -
Aed1g1640 429 ProSiteProfiles ARID domain profile. 37 128 IPR001606 GO:0003677
Aed1g1640 429 MobiDBLite consensus disorder prediction 337 396 - -
Aed1g1640 429 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 267 334 IPR009071 -
Aed1g1640 429 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 390 - -
Aed1g1640 429 SMART hmgende2 266 335 IPR009071 -
Aed1g1640 429 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 390 - -
Aed1g1640 429 SUPERFAMILY HMG-box 255 338 IPR036910 -
Aed1g1640 429 Coils Coil 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1640 Aed-Chr1 14484129 14489375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1640 1 367 ARID Transcription Factor Family AT1G04880 59.791 4.08e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed1g1640 ARID 8.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1640 - - gmx:100783284 714.916