Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1623 ATGGACCGCAGAGACTATCACCATCGACCTGCTCATTTGGCACATGCTTCTCCTCCTGAATACTTTGTTCGCCAGGGGAACACAACTTACCAAGACGATCTATATTTAAAAAAGAGTACCAGGATGCGTAGGTGGCTTTGTTGCACTTGTCAGGTGGAGGAGTCTTTCCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGAATTATGGAGATGGCAACCAAAAGGGTTCAAAGGCTTCAGCTCCTGTAAAGCCTGAAGCACATAAGGCACCACCACCACCTATTGAAGCTCCAGCCTTATCTTTAGATGAGCTGAAGGAAAAGACTGACAACTTTGGTTCAAAGGCATTAATTGGTGAAGGATCATATGGAAGGGTGTATTATGCAACCTTAAACAGTGGAAAAGCAGTGGCTGTGAAAAAGCTTGATGTTTCCATGGTCTCAAGATTGAAGAATGACAACTTTGTTGAGTTGCACGGTTACTGTGTTGAAGGAAATCTCCGTGTACTTGCATATGAATTTGCTACTATGGGCTCTCTTCATGACATATTGCATGGAAGAAAGGGAGTTCAGGGGGCACAACCAGGGCCAACTCTTGATTGGATACAGCGAGTTAGAATCGCAGTTGATGCAGCAAGGGGATTGGAATATTTACATGAGAAAGTTCAACCAGCAATTATACACAGAGATATCAGATCAAGTAATGTGCTAATCTTTGAAGATTACAAGGCTAAGATAGCCGACTTTAACCTGTCTAATCAGGCCCCTGACATGGCTGCCCGCCTTCATTCAACTCGTGCTACTCCAAGACTAAGTGAAGATAAAGTGAAACAGTGCGTAGACCCAAAATTGAAGGGAGAGTACCCCCCTAAAGGAGTTGCTAAGCTTGCAGCTGTTGCGGCACTGTGCGTGCAGTATGAAGCTGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCACTTCAACCACTTTTGAAGACTCCTGCTCCGGCACAGGCTCCGGCTCATGAAAGTTGA 1020 0.4451 MDRRDYHHRPAHLAHASPPEYFVRQGNTTYQDDLYLKKSTRMRRWLCCTCQVEESFPSNENEHLKSPRNYGDGNQKGSKASAPVKPEAHKAPPPPIEAPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNSGKAVAVKKLDVSMVSRLKNDNFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPAIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKTPAPAQAPAHES 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1623 339 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 266 332 - -
Aed1g1623 339 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 28 268 - -
Aed1g1623 339 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Aed1g1623 339 SMART tyrkin_6 113 322 IPR020635 GO:0004713|GO:0006468
Aed1g1623 339 MobiDBLite consensus disorder prediction 58 98 - -
Aed1g1623 339 Gene3D Phosphorylase Kinase; domain 1 89 175 - -
Aed1g1623 339 Gene3D Transferase(Phosphotransferase) domain 1 177 273 - -
Aed1g1623 339 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 266 332 - -
Aed1g1623 339 Pfam Protein tyrosine and serine/threonine kinase 118 258 IPR001245 GO:0004672|GO:0006468
Aed1g1623 339 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 28 268 - -
Aed1g1623 339 ProSitePatterns Tyrosine protein kinases specific active-site signature. 227 239 IPR008266 GO:0004672|GO:0006468
Aed1g1623 339 ProSiteProfiles Protein kinase domain profile. 113 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1623 339 SUPERFAMILY Protein kinase-like (PK-like) 92 328 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1623 Aed-Chr1 14298004 14302737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1623 101 327 Receptor kinase-like Gene Family AT3G58690 34.459 4.14e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Aed1g1623 PK_Tyr_Ser-Thr 7.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1623 K13436 - mnt:21407434 449.514