Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1610 ATGGAAGAACGTTCAGATTGTAGCGAAATGAATTTAGCATTTGACGTAATGAAACGTGAGAGGCATGAAGATGGGTTGTTTGAGAAGTTCAAAGGCGTAGTGCCTCAACAAAATGGGAACTGGGGTGCACAAATATATGCAAACCACCAAAGAATTTGGTTGGGGACTTTCAAATCTGAAAAAGAGGCTGCCATGGCTTATGATAGCGCTAGCATCAAACTTAGAAGCGGTGGAGAGAGTCATAGAAACTTTCCATGGAACGACCAAACAGTTAAAGAGCCCCAGTTTCAAAGCAATTATAGCACAGAATTAGTGTTGAACATGATTAGAGATGGCACCTACCCATCAAACTTTGCTACATTTCTAATTAACACTACTACTCCTACTCCTCGACAAGGTGTACTTGCCGAACATGAACAACAGTTTTCTTGCACACAACTTTTTCAGAAAGAATTAACACCGAGTGATGTTGGCAAACTCAATAGGCTTGTCATCCCAAAGAAACATGCAGTTACCTATTTCCCTAACGTATGTGATAGTGTTGACGTGGAGGTTGTGTTTCACGACAAACTCATGCGATTGTGGAAATTTCGATACTGCTATTGGAAGAGCAGTCAAAGTTACGTATTCACCCGAGGCTGGAATCGGTTTGTCAAGGATAAGAAATTAAAGGCTAAAGACGTGATTGTGTTTTGTGTGTGTGAACCTTGGAGAAAAGGTGGAGAGGGGGAAGCTTTTGCTTTGATTGATGTAATTTATTACAATGCAGATCAGAGAATGCAATGTTTTGAAGATGAAGAGACCATCAAGGCACAAAAGGGTTTCAGGCTCTTTGGTGTATGTATAACCTGA 852 0.4073 MEERSDCSEMNLAFDVMKRERHEDGLFEKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEKEAAMAYDSASIKLRSGGESHRNFPWNDQTVKEPQFQSNYSTELVLNMIRDGTYPSNFATFLINTTTPTPRQGVLAEHEQQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPNVCDSVDVEVVFHDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIVFCVCEPWRKGGEGEAFALIDVIYYNADQRMQCFEDEETIKAQKGFRLFGVCIT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1610 283 Pfam B3 DNA binding domain 148 232 IPR003340 GO:0003677
Aed1g1610 283 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 3 271 IPR044800 GO:0003700
Aed1g1610 283 Pfam AP2 domain 29 75 IPR001471 GO:0003700|GO:0006355
Aed1g1610 283 ProSiteProfiles AP2/ERF domain profile. 29 85 IPR001471 GO:0003700|GO:0006355
Aed1g1610 283 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Aed1g1610 283 SMART rav1_2 29 91 IPR001471 GO:0003700|GO:0006355
Aed1g1610 283 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Aed1g1610 283 SUPERFAMILY DNA-binding pseudobarrel domain 146 236 IPR015300 -
Aed1g1610 283 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 3 271 - -
Aed1g1610 283 CDD B3_DNA 147 231 IPR003340 GO:0003677
Aed1g1610 283 Gene3D - 143 248 IPR015300 -
Aed1g1610 283 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Aed1g1610 283 ProSiteProfiles B3 DNA-binding domain profile. 148 255 IPR003340 GO:0003677
Aed1g1610 283 SMART B3_2 148 242 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1610 Aed-Chr1 14228538 14229389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1610 29 273 RAV Transcription Factor Family AT1G50680 57.143 4.09e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed1g1610 B3 2.4e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1610 K09287 - gmx:102660503 391.734