Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1608 ATGGATCGCAAGAGGGGGAGGCCCGAAGCTGGGTTCAATTTCAATGGCGGCGCCAAGAAATCCAGGCCTGCCTCTCTATGTTTGCTGCTTCTTTTAAGAGAAATCAGATTGAGCATTGTTAAGTTACTGCTGAATACGGAGCAGTATTATTATAGGCTTGAAGATGATTTAAAGGTTTCTCTATTATTCACCTCTGGCTGTCCATTTGGTGAAGGATGCCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCTGTCTCTCAGCTGATCAATGTTGGTAGCAATCCTGTTATTCCTCAAGTTGGTAGAAATCCTGTTCCACCATCCTTCCCAGATGGGTCTTCACCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACAGCTGAAGGTTGCAAATTTGGTGACAAGTGTCACTTTGCCCATGGAGAGTGGGAGCTTGGCAGGCCTACAGCCCCATCATATGAAGATCTGCGTGTCTTGGGACAAATGCCTGGCAGCCGGGTAGGTGGGCGAGTTGAGCCCCCACATCCAGCTCATGGAGCTGCTGCCAGCTTTGGAGCCTCGGCTACTGCAAAAATAAGTATCAATGCTACCCTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCAAAGCAAATATGTCGTGTAACAGGAGCTAAACTCTCCATAAGGGATCATGACACAGATCCTAACCTTAGAAACATCGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCACGAACTTATTCTAAATGTTAGTTCTGCCTCTGGCCCTACTATGAGAAGCTTTACTTCGCAGACTTCTGCCCCTGCAAGCAACTTCAAGACTAAGCTGTGTGAAAACTTTACTAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCACATGGAAATGATGAATTGCGCAAGTCTGGAATGTGA 951 0.4606 MDRKRGRPEAGFNFNGGAKKSRPASLCLLLLLREIRLSIVKLLLNTEQYYYRLEDDLKVSLLFTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPVIPQVGRNPVPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDLRVLGQMPGSRVGGRVEPPHPAHGAAASFGASATAKISINATLAGAVIGKNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHELILNVSSASGPTMRSFTSQTSAPASNFKTKLCENFTKGSCTFGERCHFAHGNDELRKSGM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1608 316 CDD KH-I 194 255 - -
Aed1g1608 316 Gene3D K Homology domain, type 1 186 278 IPR036612 GO:0003723
Aed1g1608 316 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 181 261 IPR036612 GO:0003723
Aed1g1608 316 ProSiteProfiles Zinc finger C3H1-type profile. 119 146 IPR000571 GO:0046872
Aed1g1608 316 SUPERFAMILY CCCH zinc finger 116 149 IPR036855 GO:0046872
Aed1g1608 316 SMART kh_6 189 259 IPR004087 GO:0003676
Aed1g1608 316 Gene3D - 279 314 - -
Aed1g1608 316 Gene3D - 113 150 - -
Aed1g1608 316 SMART c3hfinal6 120 145 IPR000571 GO:0046872
Aed1g1608 316 SMART c3hfinal6 282 308 IPR000571 GO:0046872
Aed1g1608 316 Pfam RNA-binding, Nab2-type zinc finger 66 77 - -
Aed1g1608 316 ProSiteProfiles Zinc finger C3H1-type profile. 282 309 IPR000571 GO:0046872
Aed1g1608 316 SUPERFAMILY CCCH zinc finger 281 312 IPR036855 GO:0046872
Aed1g1608 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 307 IPR000571 GO:0046872
Aed1g1608 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 145 IPR000571 GO:0046872
Aed1g1608 316 ProSiteProfiles Type-1 KH domain profile. 190 254 - -
Aed1g1608 316 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 60 315 - -
Aed1g1608 316 Pfam KH domain 193 255 IPR004088 GO:0003723
Aed1g1608 316 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 60 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1608 Aed-Chr1 14217842 14222561 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g1608 KH_1 2.1e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1608 - - gmx:100818781 515.383