Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1603 ATGTATCCTCCCCCTTCATCTTCGTCGTCTGCTACTTCTTCTTCTTCTTCTCAGTCGATGAGCCAAGCGGGGCTGACGCGGTACGGGTCGGCGCCAGGGTCTCTGCTGACGAGCACGGTGGATGCGGTTATAGGGGGGGGATCGCGTCCCTACTATTCGGGAGAGTCTTCGGAGTCAAGATCTAATTACGACAACCAGGCCTCCTATGGATCCGCCTTGCTCCGTCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCATCTACCCGTCAATCACAATCACAATCACAATGGCGGCGGGTCAGGGGGATTCACAATCACGCGCGGCGGCAGCGGTGGCGGTGTATCCAATTGTTCTGGGTTGAAGTCTCAATTGAGCTTCACACACCAATCTAACATGAACATGAACATGGAGGGGTGGGACAATTCCATTGCCTTTTCAGGTGGTGCTAATAAGCGGTCCAAAAACACAAACACGAACGATCCCGATCCCGACATTCTACATTGCCTGAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAAGTCTGGAAATGGCAACGGTGGAGAAGCTATTGCATATTCCTGAAGATTCAGTCCCTTGTAAAATCCGTGCCAAGCGAGGTTGTGCTACTCATCCCCGTAGCATTGCCGAGCGGGAGAGAAGAACAAGAATAAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACATATTAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACAAAGAACTGGAGAATTGCAGTTGCGGATGCAAACAAAGCAAATAA 846 0.4988 MYPPPSSSSSATSSSSSQSMSQAGLTRYGSAPGSLLTSTVDAVIGGGSRPYYSGESSESRSNYDNQASYGSALLRQKSSPAGFLSHLPVNHNHNHNGGGSGGFTITRGGSGGGVSNCSGLKSQLSFTHQSNMNMNMEGWDNSIAFSGGANKRSKNTNTNDPDPDILHCLNALESQFSLPQTSLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKELENCSCGCKQSK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1603 281 MobiDBLite consensus disorder prediction 83 107 - -
Aed1g1603 281 Pfam Helix-loop-helix DNA-binding domain 214 260 IPR011598 GO:0046983
Aed1g1603 281 CDD bHLH_AtbHLH_like 214 266 IPR045239 -
Aed1g1603 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 259 IPR011598 GO:0046983
Aed1g1603 281 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 273 - -
Aed1g1603 281 PANTHER TRANSCRIPTION FACTOR BHLH129 24 273 - -
Aed1g1603 281 SMART finulus 215 265 IPR011598 GO:0046983
Aed1g1603 281 Gene3D - 210 280 IPR036638 GO:0046983
Aed1g1603 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 275 IPR036638 GO:0046983
Aed1g1603 281 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1603 Aed-Chr1 14174124 14175857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1603 1 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43140 44.910 1.68e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g1603 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1603 - - gmx:100819319 358.607