Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1598 ATGGGATCGTGCCTCTCCGTGGCGGGGACGGGGGCCTCCATAGATGCTTTCGATGAAGAAACTTCATCATTCAACTCAAATCCCACAACCACAAGCAATTCTCATAGAATGGAAATGAGGGTCCACAGAGTTCCTGGAAGATTATTCTTGAATGGGTCATCCCAGGTTGCTTCCTTGTTCTGCAAGCAAGGTCGCAAAGGGATCAACCAGGATGCCATGCTTCTTTGGGACAACTTCTGCTCAAACAAGGACACTGTTTTCTGCGGTGTTTTTGATGGCCATGGTCCTCATGGCCATACCGTTGCAAAGAAAGTGAGGGATTCATTCCCTTTGAAGCTTATTACTCAATGGTCTTCTAATCCTAACAACAATAACAATCACAACACACCTTCTGCCGTTGTCCCAAGTAATATTGGTACGCTCAGAGAATCCTTTGTGAAAGCCTGTAAGGTTATGGACAGAGAACTCAAACTGCACCATCAAATTGATTGCTCCTGTAGTGGGACCACGGCTGTAACCATGCTCAAGCAGGGGCAGGACCTTGTTATTGCCAATGTGGGTGACTCGAGAGCTGTATTAGCTGCCAGAATGCTGGTTGAGGCTGCTGTTCAGGCATGGAAAACCAACCTTCCCCATACTAAGGTTGATGACTGCTCTGTAGTTTGCCTATTCTTTGATTCTTCAGACTCACATTCTGACTCTGAATCATAA 711 0.4627 MGSCLSVAGTGASIDAFDEETSSFNSNPTTTSNSHRMEMRVHRVPGRLFLNGSSQVASLFCKQGRKGINQDAMLLWDNFCSNKDTVFCGVFDGHGPHGHTVAKKVRDSFPLKLITQWSSNPNNNNNHNTPSAVVPSNIGTLRESFVKACKVMDRELKLHHQIDCSCSGTTAVTMLKQGQDLVIANVGDSRAVLAARMLVEAAVQAWKTNLPHTKVDDCSVVCLFFDSSDSHSDSES 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1598 236 ProSiteProfiles PPM-type phosphatase domain profile. 56 236 IPR001932 -
Aed1g1598 236 Gene3D - 52 196 IPR036457 -
Aed1g1598 236 SUPERFAMILY PP2C-like 52 194 IPR036457 -
Aed1g1598 236 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 196 - -
Aed1g1598 236 PANTHER ALPHABET, ISOFORM E-RELATED 1 196 - -
Aed1g1598 236 SMART PP2C_4 47 223 IPR001932 -
Aed1g1598 236 PANTHER ALPHABET, ISOFORM E-RELATED 194 230 - -
Aed1g1598 236 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 194 230 - -
Aed1g1598 236 Pfam Protein phosphatase 2C 62 195 IPR001932 -
Aed1g1598 236 CDD PP2Cc 55 193 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1598 Aed-Chr1 14139282 14140413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1598 198 234 PP2C-type Phosphatase Gene Family AT3G02750 54.054 1.32e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1598 - - gmx:100816114 303.523