Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1580 ATGCAATTAGCATCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATATTCATTTGCAACCATCCGGAGAATCTTCCTTTTCATGTGAAATTATTCCTATTCCTGCTGCTTCCAACAATGATGATTTACAAAACGTTCGGGTTGATGAGACTTGTCATCTTGTAAATGCAGATCAGCCACAATGCCGAATATGCCTTGATATTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACACAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGTTTCGCTTTTTCTCACTGTACTGAGTGCCGAGCTCTCTTCATACTACGTGCAAATGTCCCATCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCCTGGGAGTGCTTGTTTACAAATTTTATGGAGATGAGCTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTTTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGGCAAAGAATCAATGAACGCCACTATCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTCTACTAG 771 0.406 MQLASNGDKEECSESEPILNHHHIHLQPSGESSFSCEIIPIPAASNNDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRALFILRANVPSDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1580 256 SUPERFAMILY RING/U-box 64 120 - -
Aed1g1580 256 CDD RING_CH-C4HC3_MARCH 69 117 - -
Aed1g1580 256 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 255 - -
Aed1g1580 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 121 IPR013083 -
Aed1g1580 256 PANTHER OS02G0132300 PROTEIN 2 255 - -
Aed1g1580 256 SMART ringv_2 68 117 IPR011016 GO:0008270
Aed1g1580 256 ProSiteProfiles Zinc finger RING-CH-type profile. 61 123 IPR011016 GO:0008270
Aed1g1580 256 Pfam RING-variant domain 69 116 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1580 Aed-Chr1 13989374 13994711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1580 56 215 C3H Transcription Factor Family AT1G50440 75.625 8.57e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1580 - - gmx:100789593 517.309