Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1578 ATGGCCTCCACTTCGCGTGGTTCCACCTCCTCCTCGAATGGCCTTCTCACCGTCACCATTGCCAACAGCCACCCTGACGACCCCGCCACCAATGACGATGACGACGATGACGACTTGCTCGCCGATCCCGATGATCCTTTTGATATTACGCATACCAAAAATGCACCGCCCGAGGCCCTCAAGCGTTGGAGACAAGCAGCTTTCGTGCTCAATGCCTCCAGGCGTTTTAGATATACTCTTGACTTGAAAAAGGCAGAGGAGAAAGATCATAAGATAAGCATGATTAGATCCCATGCACAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAACGGGAACTAGTGACAAGTACAGCACCAGTGGCATCCCCAACTCCAGTTGGTGAGTATGCAGTTGGGCTCGAACAACTTGTTTCAATGACTAAGAATCAGAGTATTTCTGCTTTACAACAATATGGAGGGGCAATGGTGTGGTGTCTTATTCAGGTTAAAGGCTTATCAAATTTACTAAAATCAAATCCGGATAAAGGGATTAACGGAGATGATGCTGATCTATCAAAGAGGAAAAATGCATTTGGAACTAATACATATCCAAGGAAAAAGGGGAGAAGTTTCTGGAGGTTTCTATGGGAAGCTTGGCAAGATCTGACTCTTATAATTTTGATTATAGCAGCTGTGGTATCATTGATACTTGGAATAAAAACAGAGGGCTTGGAAGAAGGTTGGTACGACGGGGGAAGCATTGCTTTCGCTGTTCTTCTTGTCATTGTAGTTACAGCCGTCAGTGATTATCGGCAATCTTTGCAGTTTCAGAACTTAAATGCAGAGAAACAAAATATCAAATTGGAGGTTCCTGCTGATGGAGTTGTAATCACTGGTCACTCTCTTGCCATTGATGAATCGAGTATGACTGGTGAAAGCAAGATTATTCACAAGGATCAAAAAGCACCTTTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGCTATGCTGGTAACTGGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTTCGTTTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGGCTTTCTGTAGCTGTTTGTGTCCTTGCAGTTATCTTGGGAAGATACTTCTCTGGCCATACGAAAGATTTAGATGGAAAAGTAGAATTTGTTGCTGGAGAGACTAGTATTAGTGAAACAGTAGATGGGGTCATCAAAGTTTTTACCATTGCAGTGCGAAGACTGTCAGCATGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGAAGGAAGAAACTAAATCCACCAGATGACTTGACAAAATTGCATCCGGAAGTTCTATCTCTGATAAACAAAGGCATTGCACAAAATACAACTGGCAATATTTTTGTGCCTAAGGATGGTGGAGAGGCGGAGGTGTCTGGGTCTCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAATTTTGATCTTATTAGATCAAATTCAACAATTCTCCACGTCTTCCCTTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTCTGAAACTGCCGAACTCGGTAGTACATATACATTGGAAAGGAGCTGCGGAGATAGTTCTAGGAACATGTACTCAATATATTGATTCTGATGGTCACTTGAAATCAATTGAAGAAGAGAAGGTATTCTTCAAGAATGCAATTGAAGAGATGGCTGGTCAGAGCTTGCGCTGTGTTGCCATTGCATACAGATCGTATGATTTAGACAAAATTCCATCTAATGAAGAGGAATTAGACCAGTGGTCCTTACCAGAACACGAGCTTGTCTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGATGCTGTGAAAGTATGCACTGAAGCTGGTGTTAAGGTACGCATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGTGGAATACTAAGGTCAAATGAAGATGCTGTTGAGCTAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAAGAAAGGGAACAAATTGCAAAAAATATAACAGTTATGGGGAGGTCTTCTCCTACTGACAAGCTGTTGCTCGTGCAAGCACTGCGTAAAGGTGGTGAAGTTGTTGCTGTCACGGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGTATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATAATCTTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAGCTTACTGTTAATGTTGCTGCTCTTGCTCTCTATCAAGTCACTGTTCTTCTGGTTCTTAACTTCGGTGGTGAAAGTATTCTACATAATAATCAGGATTCTATAGCCCACACCATACAAGTGAAGAATACTTTAATTTTCAATGCGTTCGTCTTTTGCCAAATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTCTTCCGGGGGTTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAGTGACCTTCGTGCTTCAGATAATCATCATCGAGTTCCTTGGAAAATTCGCAAAGACAGTGAGGCTGGATTGGAAGCTGTGGCTTGCATGTCTTTGTATTGGGATTTTCAGCTGGCCTCTTGCGATTGTTGGAAAATTCATTCCAGTTCCCAAAACACCACTGTCTCGATATTTCAGGAAATTGAAGAAGTCCAAATCCCGTGCACCACCATCACAATAG 2913 0.4229 MASTSRGSTSSSNGLLTVTIANSHPDDPATNDDDDDDDLLADPDDPFDITHTKNAPPEALKRWRQAAFVLNASRRFRYTLDLKKAEEKDHKISMIRSHAQVIRAALLFRLAGERELVTSTAPVASPTPVGEYAVGLEQLVSMTKNQSISALQQYGGAMVWCLIQVKGLSNLLKSNPDKGINGDDADLSKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAVVSLILGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIKLEVPADGVVITGHSLAIDESSMTGESKIIHKDQKAPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVCVLAVILGRYFSGHTKDLDGKVEFVAGETSISETVDGVIKVFTIAVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNPPDDLTKLHPEVLSLINKGIAQNTTGNIFVPKDGGEAEVSGSPTEKAILSWAVKLGMNFDLIRSNSTILHVFPFNSEKKRGGVALKLPNSVVHIHWKGAAEIVLGTCTQYIDSDGHLKSIEEEKVFFKNAIEEMAGQSLRCVAIAYRSYDLDKIPSNEEELDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTEAGVKVRMVTGDNLQTAKAIALECGILRSNEDAVELNIIEGKTFRELSEKEREQIAKNITVMGRSSPTDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALALYQVTVLLVLNFGGESILHNNQDSIAHTIQVKNTLIFNAFVFCQIFNEFNARKPEEMNVFRGLTKNRLFMGIVGVTFVLQIIIIEFLGKFAKTVRLDWKLWLACLCIGIFSWPLAIVGKFIPVPKTPLSRYFRKLKKSKSRAPPSQ 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1578 970 Pfam Cation transporting ATPase, C-terminus 810 944 IPR006068 -
Aed1g1578 970 PANTHER CALCIUM-TRANSPORTING ATPASE 428 824 - -
Aed1g1578 970 PANTHER CALCIUM-TRANSPORTING ATPASE 824 962 - -
Aed1g1578 970 ProSitePatterns E1-E2 ATPases phosphorylation site. 446 452 IPR018303 -
Aed1g1578 970 MobiDBLite consensus disorder prediction 29 43 - -
Aed1g1578 970 Pfam haloacid dehalogenase-like hydrolase 441 765 - -
Aed1g1578 970 SFLD Haloacid Dehalogenase 426 803 - -
Aed1g1578 970 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 831 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed1g1578 970 MobiDBLite consensus disorder prediction 1 56 - -
Aed1g1578 970 Pfam Cation transporter/ATPase, N-terminus 161 230 IPR004014 -
Aed1g1578 970 Gene3D - 213 268 - -
Aed1g1578 970 Coils Coil 586 606 - -
Aed1g1578 970 Gene3D - 185 273 - -
Aed1g1578 970 PANTHER CATION TRANSPORTING ATPASE 428 824 - -
Aed1g1578 970 MobiDBLite consensus disorder prediction 1 26 - -
Aed1g1578 970 Gene3D - 842 949 - -
Aed1g1578 970 SFLD p-type atpase 426 803 IPR044492 -
Aed1g1578 970 PANTHER CALCIUM-TRANSPORTING ATPASE 44 286 - -
Aed1g1578 970 Pfam Ca2+-ATPase N terminal autoinhibitory domain 44 87 IPR024750 GO:0005516
Aed1g1578 970 Pfam E1-E2 ATPase 285 389 - -
Aed1g1578 970 Gene3D - 354 833 - -
Aed1g1578 970 SUPERFAMILY Calcium ATPase, transmembrane domain M 160 947 IPR023298 -
Aed1g1578 970 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 451 648 IPR023299 GO:0000166
Aed1g1578 970 PRINTS P-type cation-transporting ATPase superfamily signature 301 315 - -
Aed1g1578 970 PRINTS P-type cation-transporting ATPase superfamily signature 644 655 - -
Aed1g1578 970 PRINTS P-type cation-transporting ATPase superfamily signature 751 770 - -
Aed1g1578 970 PRINTS P-type cation-transporting ATPase superfamily signature 775 787 - -
Aed1g1578 970 PRINTS P-type cation-transporting ATPase superfamily signature 444 458 - -
Aed1g1578 970 PRINTS P-type cation-transporting ATPase superfamily signature 666 676 - -
Aed1g1578 970 SUPERFAMILY HAD-like 442 834 IPR036412 -
Aed1g1578 970 Gene3D - 57 109 - -
Aed1g1578 970 PANTHER CALCIUM-TRANSPORTING ATPASE 285 428 - -
Aed1g1578 970 PANTHER CATION TRANSPORTING ATPASE 285 428 - -
Aed1g1578 970 PANTHER CATION TRANSPORTING ATPASE 44 286 - -
Aed1g1578 970 SUPERFAMILY Calcium ATPase, transduction domain A 285 350 IPR008250 -
Aed1g1578 970 Gene3D - 454 651 IPR023299 GO:0000166
Aed1g1578 970 PANTHER CATION TRANSPORTING ATPASE 824 962 - -
Aed1g1578 970 Gene3D - 441 796 IPR023214 -
Aed1g1578 970 Gene3D - 285 353 - -
Aed1g1578 970 SMART Cation_ATPase_N_a_2 159 235 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1578 Aed-Chr1 13960886 13976717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1578 819 964 Primary Pumps ATPases AT3G21180 68.707 8.45e-59 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1578 K01537 - gmx:100777845 1436.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1578 1 13960886 13976717 Aed1g1578 1 13960886 13976717 ECH