Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1569 ATGAAGCTCACCGTGAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGCCAGCAATTGCTCATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAACAGACAATAGGGTCTCTGAGGATGGCTTTCTTGTTGTCATGCTTAGTAAGCCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCACGTCTCTAGTACAAACTCAATCTGCAAACAACAATGCATCTGCGACACATGTCACAACTACAAGTGTGATTACAGATACATATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACAATTCAGCAAATTATGGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTCAGTCATGCTCTTCGAGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGATTTCCTGAAGCAGCAGTGCCAGCTGCTCCTTACCCAATCAGTCAAACAACTGAAACAGGTGGGGCCACTGCCGGAGCTGTTCCTGGGGTCCCTAATTCATCTCCCTTGAATATGTTTCCACAGGAAACAATTTCTGGTGCCAGAGCTGGAATTGGATCGCTGGACTTTCTTAGAAACAATCCCCAGTTTCAAGCATTACGCTCAATGGTGCAATCCAATCCACAAATTCTGCAGCCTGTACTTCAGGAACTTGGAAAGCAGAATCCTGGTCTCTTGAGACTAATTCAAGAGCATCATGCTGAATTTCTCCAGTTGATTAATGAACCTGTTGAGGGTTCTGAAGGTGATTTATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGACGCCAGCGGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCTGTCATCGAGGCATTTTTGGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGAGATTTTGAGGATTAA 1056 0.4432 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLTDNRVSEDGFLVVMLSKPASNPPITVSTPNSTSLVQTQSANNNASATHVTTTSVITDTYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRDTVSHALRAAYNNPERAVDYLYSGFPEAAVPAAPYPISQTTETGGATAGAVPGVPNSSPLNMFPQETISGARAGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHAEFLQLINEPVEGSEGDLFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1569 351 Pfam UBA/TS-N domain 307 342 IPR015940 -
Aed1g1569 351 Pfam UBA/TS-N domain 131 169 IPR015940 -
Aed1g1569 351 TIGRFAM rad23: UV excision repair protein Rad23 1 350 IPR004806 GO:0006289
Aed1g1569 351 SUPERFAMILY UBA-like 128 175 IPR009060 GO:0005515
Aed1g1569 351 SUPERFAMILY XPC-binding domain 224 289 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aed1g1569 351 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 305 345 IPR015940 -
Aed1g1569 351 Gene3D - 124 174 - -
Aed1g1569 351 Gene3D - 217 282 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aed1g1569 351 SUPERFAMILY Ubiquitin-like 1 87 IPR029071 -
Aed1g1569 351 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 129 172 IPR015940 -
Aed1g1569 351 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 350 - -
Aed1g1569 351 Pfam XPC-binding domain 226 281 IPR015360 GO:0003684|GO:0006289|GO:0043161
Aed1g1569 351 Gene3D - 298 346 - -
Aed1g1569 351 PRINTS DNA repair protein Rad23 signature 333 348 IPR004806 GO:0006289
Aed1g1569 351 PRINTS DNA repair protein Rad23 signature 301 317 IPR004806 GO:0006289
Aed1g1569 351 PRINTS DNA repair protein Rad23 signature 318 332 IPR004806 GO:0006289
Aed1g1569 351 PRINTS DNA repair protein Rad23 signature 252 274 IPR004806 GO:0006289
Aed1g1569 351 SMART CBM 224 267 IPR006636 -
Aed1g1569 351 SMART uba_6 307 344 IPR015940 -
Aed1g1569 351 SMART uba_6 131 171 IPR015940 -
Aed1g1569 351 Gene3D - 1 76 - -
Aed1g1569 351 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Aed1g1569 351 SMART ubq_7 1 75 IPR000626 GO:0005515
Aed1g1569 351 CDD UBA1_Rad23_plant 125 174 - -
Aed1g1569 351 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 350 - -
Aed1g1569 351 CDD Ubl_Rad23 1 74 - -
Aed1g1569 351 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Aed1g1569 351 SUPERFAMILY UBA-like 286 348 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1569 Aed-Chr1 13913389 13918216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1569 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.47e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1569 K10839 - gmx:100804038 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1569 1 13913389 13918216 Aed2g0020 2 223411 229563 PCT