Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1567 ATGAAGAAGATGAATGAGTCGCAATCGCGAACACGCAGTCCCCTCAACGACAAGGAAAACTCGAAGCCCAAGCCCAGGCCCAGCTCGCTTGAGTTTTGCATGCAAATGAACAACCTTCAATCCCACTCTCTCAACATTTGGGACTACTCTGAATCTGATTCGGAATCAGCTCCTGCTTCTTCCTGGTCCACACTGCCTAACAAGTCCTTGATCTGTAGAGCCTTACCTTTAGATGTTGGAAGCTGCACTTGTTTTATCGTCAAGGAATTATCAGAATCAGGAACAGGGGGCACTTTCTTCTCTCTTTATACCAATGAAGGCCAGGGACGGCAGAATAGGAAACTAGCTGTGGCCCACCATAAGCGTCGAAATGGGAGGTCTCACTTCACAGTAGCTCAGGCTCAGGCGGCTCAGGCTCATACTTTTCTTGGCACCGTAACTGCTAACCTCATTGGCTCAAAATACAACATTTGGGATCAGGGATATCCATATCCTCATCATTCTCGTAGCAAGCCACCTCTGGCAGTTGTCAAGTATATACCTACAGTAACAACATGCACAGGAAGTCACAGAAGCATGAGGGCATATATACCCAAGCATCAATCTATGCCACTCAAGAACACAACCCAGGTACAACATATAAAAGGATTGCCATTGAATTGGGAGGGAAAACTGGACAAAGTCCATCAACTATCCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATATGAGCTTGACTTTAGAGATCAAGGAAAGCCAGAATTTAGAGTCCAAAGATCAGTCAAAAATTTTCAGCTGACTTTAGAGGAGAATGGAAGGCAGACGATCCTGCAGCTAGGGAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGGTATCCTTTGACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATGGATACAAAGCTTTGTTGCACTGTCTAG 957 0.4504 MKKMNESQSRTRSPLNDKENSKPKPRPSSLEFCMQMNNLQSHSLNIWDYSESDSESAPASSWSTLPNKSLICRALPLDVGSCTCFIVKELSESGTGGTFFSLYTNEGQGRQNRKLAVAHHKRRNGRSHFTVAQAQAAQAHTFLGTVTANLIGSKYNIWDQGYPYPHHSRSKPPLAVVKYIPTVTTCTGSHRSMRAYIPKHQSMPLKNTTQVQHIKGLPLNWEGKLDKVHQLSSKVPLYNKISKQYELDFRDQGKPEFRVQRSVKNFQLTLEENGRQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASMDTKLCCTV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1567 318 MobiDBLite consensus disorder prediction 1 30 - -
Aed1g1567 318 MobiDBLite consensus disorder prediction 1 25 - -
Aed1g1567 318 PRINTS Tubby superfamily signature 231 248 IPR000007 -
Aed1g1567 318 PRINTS Tubby superfamily signature 142 166 IPR000007 -
Aed1g1567 318 PRINTS Tubby superfamily signature 295 317 IPR000007 -
Aed1g1567 318 PRINTS Tubby superfamily signature 274 293 IPR000007 -
Aed1g1567 318 PANTHER TUBBY-RELATED 13 316 - -
Aed1g1567 318 Pfam Tub family 76 312 IPR000007 -
Aed1g1567 318 PANTHER TUBBY-LIKE PROTEIN 8 13 316 - -
Aed1g1567 318 Gene3D Tubby Protein; Chain A 64 317 IPR025659 -
Aed1g1567 318 SUPERFAMILY Tubby C-terminal domain-like 59 317 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1567 Aed-Chr1 13896916 13898279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1567 26 211 TUB Transcription Factor Family AT1G16070 49.282 5.77e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed1g1567 Tub 1.1e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1567 K19600 - gmx:100803500 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1567 1 13896916 13898279 Aed1g1567 1 13896916 13898279 ECH