Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1558 ATGAAAAATATAAAGCAAAGCAGCCATTCCCATTCGAACTCTTCCATTTCCATTTCCATGGACGACTTCCTCGCTCTAATTTGCCCTAATACGCCATTCGTTTGGGATGGACAGATATTTTCCGACTGTTTTGAAGACATATATCCTTATTCTTTTTGTAGCTTTCGTCTCGTCCACTCCACTGATTATATGAATTGGTTTTCCTTAATATCTTCTACTGTTTTAGGTTTTTCAGTCAACATAGTGACTGTTGTTATGATAGTTGTGCTTGGTTTTAATCAGAAGATTGATCGAGGAGTTCGGAGATCAGATGCCCAGATGACCCTTCCAGAAAAATTTGTCCTGAATTTTATACCAGCTATTGCAGCGTGTCTTTCAATCGTAGACATGATCTTTCTGTGGAAGAAAGACCATAATAATCACTTTGTTGGATATCATAAATGGTTCTACAGCTGTTCTGAGTTGATGGTGTGGATAAATATCATTCTTTTCACAATGTGTGCCAGCAGTCATTACATTGTCCTCAACCGTGCCTTATGTTTCTGGTGGATTCTGAAAGCAATATTGGCAGTTTTCTATTTGATGACAAAGTTTTCATCATTGAAGGTTTCAGTCTGCATCATGGAAAGCTTAATTGTTCTCTTGAATATCTCATTTGGCATAACTATCAATGTGATCAGGATAAAGATACCATCTTTCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCGAATGGAGTGGACCTTGAGGAAGGTGGCTATCATGACCTTGGAAATAATGGAAACTTTTGGGATTTGATGACTTTCAAATTCATAACTCCAGTAATGAATCATGGTGTGGTAAAGCAATTAGACTCTGAAGACCTGTTGCCTCTACCTACTGATATTAGTTCTTCTTCCTGTCATGATGTGATTTTATCCTGCTGGCAAGCTCAACTGAGTAACAATGGTTCAAACCCATCTTTGTTTAGAGCACTCTGTAGTGCGTATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGTTTACAAGGGAGAAAACAGGATGTTTCCAAATGATATTGAGCTCTCATCCTGCCCTTGTTTGTTCAGTGAATTTGGACGGGTATTTACTGGCACTATCCTTGGGTCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTGATCTATGTGAAGTGTCTATGTGTGAACTTAGCAGAGCGTTCAAAATTCTCAAATGGCGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTCCATGATATGTGGAGCCTGCCTTTACAAATTGGAGTGGCGCTCTATCTATTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGGGCTACTGAGCAAATGATGAAGGAGAAGGACGAAAGGATTCGTAAGACAGGAGAATTTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACCAGATCTTTGGAAGTCAAACATTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTTTTCTTTTGGGCTACAACACCAACACTCTTTTCTCTTTTCACATTTGGACTCTTTGTACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCTTTGTTTAACACGCTGATTTCACCACTAAATTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCCTCCAGACGGTTGAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGTGGGAAACAAAAATTCCAGTCCATCATCATTCCTGAGTAAACAGCCTGATTCTGTACAAGGTCTGGGTGTCTTTATCCAAGATGCATGCTGTACTTGGTCAAGCAGTGAGGGACAAGCATTAAATTTGGTGTTGAATCATGTGACTCTAAGTGTGTCCCAGGGTACCTTTGTTGCGGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATTCTTGGAGAAATGCAGCTTGCTCATGGCTCTATTTATTCCAATGAATCCATTGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTGCGTGACAACATATTATTCGGGAAAAGCTATGATCATGAAAGGTATACTGATACACTGCAGGCATGTGCATTAGATGTTGATGTCTCAATGATGGTTGGAGGTGACATGGCTTATATTGGAGAGAAAGGAGTCAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCAATGTATCATGACTCAGATGTTGTTATGCTTGATGATGTCCTGAGTGCAGTTGATGTTCAAGTTGCTCAATGTATCTTACACAATGCCATTTTAGGGCCTCTTATGCAGAGAAAAACCCGATTGCTCTGTACTCATAGCATTCAGGCAATATCTTCTGCTGATATAATTGTTGTAATGGACAAGGGACGCATAAAATGGATGGGAAATTCAGCTGACTTTCCAATTTCTTCATATACAGAATTTTCTCCATTGAATGAAATTGATTCAGCTTTACTGAATCATAGACAATCTAGCAGCACAAATCTTTCATCCAAATCCAAGGAGCAGTCTCTTCCTGATTCGGATAGTATGCATGCTCTGGACAGAGCAGAGGAGATTGTCGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAACTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGTTTCTCGTAATGGGAATGATTTATGGCTGTCATATTGGGTTGATACAACAGAAAGCAGTCAAACAAGATATTCTGTGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCCTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGATTGCAAGCAGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGAAGAATACTGAACAGGTTATCTTCAGATCTATATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTTATAGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGTGGCTTCAGTTCTTCTACAGGTCAACATCTAGAGAATTACGAAGACTGGACAGTGTTTCTCGTTCTCCAATATACACATCTTTCACTGAAACACTTGATGGATCATCAACTATTAGGGCATTTAAATCTGAGGACTTTTTCTTTGCCAAATTCATTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAATTATTAGCTGCATGCATCATCTCATTCATAGCTGTGATGGCTGTTGTTGGATCTCATGGCAATCTGCCTATCAACTTTGGTACCCCAGGACTGGTAGGATTGGCCCTCTCATATGCAGCTCCAATTGTGACCCTATTGGGGGGCTTTTTATCAAGCTTCACCGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGCCCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGATGCCTACACTTGAGTCCAGATTGGCCAAATCAAGGAGTTATTGAATTCCAGTCTGTTACTTTGAAATATATGCCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCAGGAGGGACACAAGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTTTCCCTAATATGTACAGGCTCTATCACAATTGATGGCGTGGATATTAAAAATATTCCTGTCAGAGAGCTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCATTGAAAATGAATGATGACTTAAAAATTTGGAATGCATTGAAGAAGTGCCATGTGAAAGAGGAAGTAGAAGGAGCTGGAGGGCTGGATGTTGTTGTAAAGGAAGCGGGGATGTCATTTTCAGTTGGCCAGAGGCAGCTTCTTTGCCTTGCACGTGCACTTCTGAAATCTTCAAAGGTTCTCTGTTTGGATGAATGCACGGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAAATACCATTTCCAGTGAATGCGAAGGAATGACAGTGATCACAATAGCTCACCGGATTTCAACTGTTATAAACATGGACAGCATTCTGATTCTTGACCGTGGGAAGCTGACTGAACAGGGAAATCCGCAGGTTCTTCTGAATGATGATAGCTCTATATTTTCTAGTTTTGTTAGAGCTTCAGCAATGTAA 4485 0.3958 MKNIKQSSHSHSNSSISISMDDFLALICPNTPFVWDGQIFSDCFEDIYPYSFCSFRLVHSTDYMNWFSLISSTVLGFSVNIVTVVMIVVLGFNQKIDRGVRRSDAQMTLPEKFVLNFIPAIAACLSIVDMIFLWKKDHNNHFVGYHKWFYSCSELMVWINIILFTMCASSHYIVLNRALCFWWILKAILAVFYLMTKFSSLKVSVCIMESLIVLLNISFGITINVIRIKIPSFKSSLLEDPLLSNGVDLEEGGYHDLGNNGNFWDLMTFKFITPVMNHGVVKQLDSEDLLPLPTDISSSSCHDVILSCWQAQLSNNGSNPSLFRALCSAYGWPYLRLGLLKFTREKTGCFQMILSSHPALVCSVNLDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYVKCLCVNLAERSKFSNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIARATEQMMKEKDERIRKTGEFLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFVLMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKFKVGNKNSSPSSFLSKQPDSVQGLGVFIQDACCTWSSSEGQALNLVLNHVTLSVSQGTFVAVIGEVGSGKSSLLYSILGEMQLAHGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDHERYTDTLQACALDVDVSMMVGGDMAYIGEKGVNLSGGQRARLALARAMYHDSDVVMLDDVLSAVDVQVAQCILHNAILGPLMQRKTRLLCTHSIQAISSADIIVVMDKGRIKWMGNSADFPISSYTEFSPLNEIDSALLNHRQSSSTNLSSKSKEQSLPDSDSMHALDRAEEIVEVELRKEGKVELGVYKNYAVFTGWFMTVIICLSAILMQVSRNGNDLWLSYWVDTTESSQTRYSVSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNKLLNKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFIGLLGITIILCYVQWLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFAKFIEHITLYQKTSYTEIVASLWLSLRLQLLAACIISFIAVMAVVGSHGNLPINFGTPGLVGLALSYAAPIVTLLGGFLSSFTETEKEMVSVERALQYMDIPQEEQTGCLHLSPDWPNQGVIEFQSVTLKYMPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLSLICTGSITIDGVDIKNIPVRELRTHLAIVPQSPFLFEGSLRDNLDPLKMNDDLKIWNALKKCHVKEEVEGAGGLDVVVKEAGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQNTISSECEGMTVITIAHRISTVINMDSILILDRGKLTEQGNPQVLLNDDSSIFSSFVRASAM 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1558 1494 Gene3D ABC transporter type 1, transmembrane domain 348 628 IPR036640 GO:0005524|GO:0016021
Aed1g1558 1494 CDD ABCC_MRP_domain2 1255 1474 - -
Aed1g1558 1494 CDD ABCC_MRP_domain1 657 859 - -
Aed1g1558 1494 ProSitePatterns ABC transporters family signature. 783 797 IPR017871 GO:0005524
Aed1g1558 1494 Gene3D ABC transporter type 1, transmembrane domain 917 1241 IPR036640 GO:0005524|GO:0016021
Aed1g1558 1494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 655 882 IPR003439 GO:0005524
Aed1g1558 1494 SUPERFAMILY ABC transporter transmembrane region 368 619 IPR036640 GO:0005524|GO:0016021
Aed1g1558 1494 Gene3D - 1242 1492 IPR027417 -
Aed1g1558 1494 SUPERFAMILY ABC transporter transmembrane region 947 1239 IPR036640 GO:0005524|GO:0016021
Aed1g1558 1494 Gene3D - 645 891 IPR027417 -
Aed1g1558 1494 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 951 1222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g1558 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1250 1482 IPR027417 -
Aed1g1558 1494 Pfam ABC transporter 1275 1421 IPR003439 GO:0005524
Aed1g1558 1494 ProSitePatterns ABC transporters family signature. 1393 1407 IPR017871 GO:0005524
Aed1g1558 1494 Pfam ABC transporter transmembrane region 371 599 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g1558 1494 Pfam ABC transporter transmembrane region 951 1185 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g1558 1494 CDD ABC_6TM_MRP7_D1_like 367 619 - -
Aed1g1558 1494 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 313 1474 - -
Aed1g1558 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 672 868 IPR027417 -
Aed1g1558 1494 CDD ABC_6TM_MRP7_D2_like 950 1234 - -
Aed1g1558 1494 Pfam ABC transporter 676 808 IPR003439 GO:0005524
Aed1g1558 1494 SMART AAA_5 1283 1473 IPR003593 -
Aed1g1558 1494 SMART AAA_5 685 859 IPR003593 -
Aed1g1558 1494 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 371 611 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g1558 1494 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 313 1474 - -
Aed1g1558 1494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1257 1490 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1558 Aed-Chr1 13827132 13841726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1558 675 902 Calmodulin-binding Proteins AT2G36910 25.806 5.38e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1558 K05674 - gmx:100814181 2550.39