Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1553 ATGGCTGTCACAGGCGGTTCCGGGCAGCCACAATTCATTTCGAGCACTGGCAACCGAAGCTTTTCCAATGCGCCACTCATTGAGAACTCAGATACTAATCAAATTGTTGTGCCTGATAGGAGAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTCGAGACGGATCTTCAGTCTGGGGCACAAAATAAATATGAGTTACTTTGGATCATATTGTTGGCATCGTGTGCTGCTCTTGTAATTCAATCAATGGCAGCCAATCTTGGGGTGGTCACTGGAAAACACTTAGCAGAGCATTGTAGAGCTGAATATCCCCGGGCGCCCAACTTCATCCTTTGGATTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCGGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTTACAGGATTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCCTGATTGCATTTCTAGTATTTACAATTGCTGCATGTTTTATGGCTGAGCTTGGATATGCAAAGCCTAATGCTAAAGAAGTTCTGAAGGGTCTTTTTGTGCCAGAACTAAAAGGGAGTGGTGCTACTGGTCTTGCAATTTCTCTACTTGGAGCTATGGTTATGCCGTGGGTTCTTCATGTCGTCTTCAACCATTTAACTTTGTTTTCTTTTAAAATTTATTTTCACACCATGCTTCTTTATGCATTTGCCTCAGGCACAATCTCTTCCTTCACTCAGCACTGGTGCTTTCAAGAAAAATACCACGATCAGTTCGAGGAATCAATTTGTTTGCCTTTGGATACTTCCTTTCACGCCAGTTTCTTCAACAATATGGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTGATGGTGGCCTTCCTTATAAATGTCTGTGTTATTTCTGTAAGTGGTACTGTTTGCAATTCTCCGAATTTGAATGCAGAAGATCAGCTGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAATTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACCGGAACCTATGCAGGACAGTATGTCATGCAGGGATTTCTGGATTTACGATTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCAGTCATTGGTGGCTCAGCTGGGGCTGGGAAGCTCATAATAATTGCATCCATATCGGGTGTTACTTGGATAATCGGTAGCCTCCTGATGGGCATAAACATATACTACTTAATAACCGGGTTCATGAAGCTGCTGCTGCATAGTCAGTTAAAAATTGTGGCTAAGGTGTTTATTGGGATATTAGGATTTGCAGGAATGGCAATGTATTTGGCTGGTATAACATATCTAGTAATTCGCAAAAATAAAGAGGCAACACACCTTTTGGCTCTAACAGCACCAGAAAATCAAGAAATGACAAATGAACAAGGCAATGGGTCAATCTATTCTCTTCCAAGAGAAGACATAGTAAGCATGCAGTTGCCTCAAAGAAGTAGTACTCCTGCAGATATTGACTAA 1677 0.4156 MAVTGGSGQPQFISSTGNRSFSNAPLIENSDTNQIVVPDRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQNKYELLWIILLASCAALVIQSMAANLGVVTGKHLAEHCRAEYPRAPNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTIAACFMAELGYAKPNAKEVLKGLFVPELKGSGATGLAISLLGAMVMPWVLHVVFNHLTLFSFKIYFHTMLLYAFASGTISSFTQHWCFQEKYHDQFEESICLPLDTSFHASFFNNMEACRFYMIESAFALMVAFLINVCVISVSGTVCNSPNLNAEDQLSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASISGVTWIIGSLLMGINIYYLITGFMKLLLHSQLKIVAKVFIGILGFAGMAMYLAGITYLVIRKNKEATHLLALTAPENQEMTNEQGNGSIYSLPREDIVSMQLPQRSSTPADID 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1553 558 PANTHER METAL TRANSPORTER NRAMP1 445 556 - -
Aed1g1553 558 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 445 556 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 Pfam Natural resistance-associated macrophage protein 66 241 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 Pfam Natural resistance-associated macrophage protein 308 444 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 PANTHER METAL TRANSPORTER NRAMP1 1 243 - -
Aed1g1553 558 PANTHER METAL TRANSPORTER NRAMP1 307 445 - -
Aed1g1553 558 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 45 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 PRINTS Natural resistance-associated macrophage protein signature 412 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 PRINTS Natural resistance-associated macrophage protein signature 384 403 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 PRINTS Natural resistance-associated macrophage protein signature 153 172 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 PRINTS Natural resistance-associated macrophage protein signature 125 151 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 PRINTS Natural resistance-associated macrophage protein signature 178 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 243 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aed1g1553 558 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 307 445 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1553 Aed-Chr1 13801453 13807290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1553 1 558 Inorganic Solute Cotransporters AT1G80830 64.805 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1553 K21398 - gmx:100808501 865.529