Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1551 ATGGACATCATGACTGCTCTACAGCTCGTGCTAAGAAAATCTCTGGCTTATGGGGGTCTTGCACGAGGTCTTCATGAAGGTGCTAAGGTGATTGAGAAGCATGCTGCACAGCTCTGCGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTGAAACTGGTGAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTAGGAGAATGGGCTGGTTTGTGTAAGATTGATTCGGAGGGAAAGGCTAGGAAGGTAACTGGTTGCTCATGTGTGGTTGTCAAGGATTTCGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAAGCTAACTGA 363 0.4683 MDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1551 120 PANTHER 40S RIBOSOMAL PROTEIN S12 1 119 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed1g1551 120 Gene3D - 1 120 IPR029064 -
Aed1g1551 120 PANTHER 40S RIBOSOMAL PROTEIN S12 1 119 - -
Aed1g1551 120 PRINTS Ribosomal protein S12E family signature 10 23 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed1g1551 120 PRINTS Ribosomal protein S12E family signature 24 40 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed1g1551 120 PRINTS Ribosomal protein S12E family signature 65 86 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed1g1551 120 PRINTS Ribosomal protein S12E family signature 90 103 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed1g1551 120 SUPERFAMILY L30e-like 2 118 IPR029064 -
Aed1g1551 120 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 6 99 IPR004038 -
Aed1g1551 120 Coils Coil 114 120 - -
Aed1g1551 120 ProSitePatterns Ribosomal protein S12e signature. 6 24 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1551 Aed-Chr1 13796342 13798254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1551 1 120 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.000 9.21e-66 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1551 K02951 - gmx:100500093 244.588