Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1549 ATGAACATCCCATGCTCAAAGGAGAAGGAGGACAAAGAACACCTCCATGTTGATGTAGTACTGGAGTCAAAGGCAGAGGAAGAACTGAACCTGATAAAGTGTATCGATACAAATTTGTCCATGAAGTCCTCCTCAGAATTGGAGCCGGCGAGGGTATTCTCATGCAACTACTGTGAAAGGAAGTTTTATAGTTCGCAGGCACTTGGGGGACACCAGAATGCCCATAAGCGTGAAAGAACTTTGGCGAAAAGAGGACACAAAGCTGGTGTTGCTGCTGGTGGTGCAGTTTCCATAGATTTTGCACGGAGGTACTCCAGCATCAGCATGGCTTCTCTGCCTTTGCATGGAATTCAGGCGCATTCTATGATCAACAAACCCCACAGCTCTAATCCCTTTTTTGGTAATTTGTCCCAGAAGCGCCCTATGCCAGAGGGATTTGCAGTTGCAGCAGCTGTAAATGCAATATTTTAG 471 0.4628 MNIPCSKEKEDKEHLHVDVVLESKAEEELNLIKCIDTNLSMKSSSELEPARVFSCNYCERKFYSSQALGGHQNAHKRERTLAKRGHKAGVAAGGAVSIDFARRYSSISMASLPLHGIQAHSMINKPHSSNPFFGNLSQKRPMPEGFAVAAAVNAIF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1549 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Aed1g1549 156 PANTHER ZINC FINGER PROTEIN JAGGED 8 136 IPR045320 GO:0003700
Aed1g1549 156 SUPERFAMILY beta-beta-alpha zinc fingers 51 80 IPR036236 -
Aed1g1549 156 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Aed1g1549 156 Gene3D Classic Zinc Finger 31 92 - -
Aed1g1549 156 PANTHER ZINC FINGER PROTEIN 1 8 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1549 Aed-Chr1 13784806 13785469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1549 8 138 C2H2 Transcription Factor Family AT5G10970 44.138 1.23e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1549 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1549 - - gmx:100812573 157.147