Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1548 ATGATCATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACGAGAATATGGCTAGGAACGTTTGAAACAGCAGAAGATGCGGCTAGAGCGTACGACGAAGCAGCAAAGTTGATGTGCGGACCAAAAGCACGCACCAATTTCCCTTACAATCCTAATGAGCCACAGTCATCATCATCCAAGCTCCTTTCTGCTACTCTCACTGCCAAGCTACACAAGTGTCACATGGCCTCTCTTTCCAAGCAGAAAGACCCTCCTCATCAAGGATCATCCTCATCCTCATCCTCGGGAACACATGTTCAACAACAACAACAACAACTCCAACTCCAAGTCGCAGAAGAACAACACCACCCACTTCTTCAAGATGATCACATTGAACAGATGATACAAGAACTGCTTCATTATGGCTCAATGGAGCTTACTTTTCTTCACTCACCCTAA 492 0.4756 MIMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAAKLMCGPKARTNFPYNPNEPQSSSSKLLSATLTAKLHKCHMASLSKQKDPPHQGSSSSSSSGTHVQQQQQQLQLQVAEEQHHPLLQDDHIEQMIQELLHYGSMELTFLHSP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1548 163 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
Aed1g1548 163 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Aed1g1548 163 Gene3D AP2/ERF domain 8 67 IPR036955 GO:0003700|GO:0006355
Aed1g1548 163 MobiDBLite consensus disorder prediction 100 126 - -
Aed1g1548 163 CDD AP2 8 68 IPR001471 GO:0003700|GO:0006355
Aed1g1548 163 PANTHER ETHYLENE RESPONSE FACTOR 3 159 - -
Aed1g1548 163 MobiDBLite consensus disorder prediction 94 126 - -
Aed1g1548 163 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700|GO:0006355
Aed1g1548 163 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 159 - -
Aed1g1548 163 Pfam AP2 domain 9 58 IPR001471 GO:0003700|GO:0006355
Aed1g1548 163 SMART rav1_2 9 72 IPR001471 GO:0003700|GO:0006355
Aed1g1548 163 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1548 Aed-Chr1 13779056 13779644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1548 3 157 AP2-EREBP Transcription Factor Family AT5G25190 65.116 8.52e-73 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed1g1548 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1548 - - gmx:100805499 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1548 1 13779056 13779644 Aed1g1548 1 13779056 13779644 ECH