Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed1g1547 | ATGGGAAGTCTCGAAAATATCAAGAATGAGGCAGTTGATCTGGAGCGTATACCTGTTGATGAGGTGTTCCGAGAACTCAACTGTTCCAAGGAAGGTCTCTCAACCGCTGCCATTATGGCGATTGCATTGGCAAATGGAGGGGGTGAGCCACCGGACTGGCAGGACTTTGTGGGAATAACGGTGTTGCTAATAGTGAACTCAGCGATTAGTTTTATCGAAGAGAACAACGCAGGGAACGCAGCAGCAGCACTGATGGCAGGGCTAGCTCCGAAAACAAAGGCTGTTGTTATCGCTACTGGGGTCCACACCTTCTTCGGCAAGGCTGCTCATTTAGTTGACAGCACTAACAATGTTGGCCATTTCCAAAAGGTCTTGACTGCCATTGGTAACTTCTGCATTTGTTCCATTGCTATTGGCATGATCATAGAGATTGTTGTCATGTATCCAATCCAGCATCGCAAGTATAGAAGTGGAATCAACAATCTCTTGGTTCTTCTCATCGGAGGTATTCCCATTGCCATGCCAACTGTCTTGTCTGTCACTATGGCTATCGGTTCCCATAGGCTTTCCGAGCAAGGTGCTATCACCAAGAGGATGACCGCCATTGAGGAGATGGCTGGAATGGATGTTCTATGCAGTGACAAGACTGGCACTCTAACACTTAACAAGCTTACAGTAGACAAGACTTTGGTTGAGGTTTTCGCTAAAGACGCTGACAAGGATACTGTAATGTTGCTTGGAGCTAGGGCCTCTAGGATTGCCACGGTGATAGCTGTGTATGCAAACTGGGAGTTTGCAAAAATGCAAGGGATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTGTTACCTATATACCCATGGATATACTCAAGTTCATAATCCGATATGCACTCACCGGAAAGGCATGGAACAATATAACTGAGAATAGGATTGCTTTCACCACAAAGAAGGATTATGGAAAGGGAGAGAGAGAAGCACAGTGGGCTGCAGCTCAACGCACATTGCATGGTTTGAATCCACCTGAAACGGAGGAAATGTTGAATGAAAAGAACAGCTATAGGGAATTGTCTGAACTTGCAGAACAGGCCAAGAAGCGTGCTGAAGTTGCAAGGCTAAGGGAGCTTCACACACTAAAGGGGCACGTTGAGTCTGTTGTTAAACTCAAAGGACTTGACATCGAGACAATTCAGCAACACTACACCGTTTGA | 1218 | 0.4631 | MGSLENIKNEAVDLERIPVDEVFRELNCSKEGLSTAAIMAIALANGGGEPPDWQDFVGITVLLIVNSAISFIEENNAGNAAAALMAGLAPKTKAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGMIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLVEVFAKDADKDTVMLLGARASRIATVIAVYANWEFAKMQGIGWGWAGVIWLYSIVTYIPMDILKFIIRYALTGKAWNNITENRIAFTTKKDYGKGEREAQWAAAQRTLHGLNPPETEEMLNEKNSYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV | 405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed1g1547 | 405 | PANTHER | PLASMA MEMBRANE ATPASE | 3 | 36 | - | - | |
| Aed1g1547 | 405 | SUPERFAMILY | HAD-like | 205 | 309 | IPR036412 | - | |
| Aed1g1547 | 405 | Gene3D | - | 354 | 405 | - | - | |
| Aed1g1547 | 405 | PANTHER | PLASMA MEMBRANE ATPASE | 94 | 253 | - | - | |
| Aed1g1547 | 405 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 105 | 246 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Aed1g1547 | 405 | Coils | Coil | 349 | 376 | - | - | |
| Aed1g1547 | 405 | Gene3D | - | 224 | 255 | IPR023299 | GO:0000166 | |
| Aed1g1547 | 405 | PANTHER | PLASMA MEMBRANE ATPASE | 36 | 94 | - | - | |
| Aed1g1547 | 405 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 253 | 386 | - | - | |
| Aed1g1547 | 405 | Pfam | E1-E2 ATPase | 90 | 191 | - | - | |
| Aed1g1547 | 405 | Gene3D | - | 209 | 223 | IPR023214 | - | |
| Aed1g1547 | 405 | Gene3D | - | 105 | 115 | - | - | |
| Aed1g1547 | 405 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 36 | - | - | |
| Aed1g1547 | 405 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 13 | 207 | IPR023298 | - | |
| Aed1g1547 | 405 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 214 | 220 | IPR018303 | - | |
| Aed1g1547 | 405 | PANTHER | PLASMA MEMBRANE ATPASE | 253 | 386 | - | - | |
| Aed1g1547 | 405 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 36 | 94 | - | - | |
| Aed1g1547 | 405 | Gene3D | - | 32 | 94 | - | - | |
| Aed1g1547 | 405 | Gene3D | - | 116 | 208 | - | - | |
| Aed1g1547 | 405 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 94 | 253 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed1g1547 | Aed-Chr1 | 13772538 | 13776327 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed1g1547 | 3 | 95 | Primary Pumps ATPases | AT2G07560 | 55.639 | 2.32e-25 | 107 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed1g1547 | K01535 | - | gmx:100796240 | 306.605 |