Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1545 ATGAATCTTCTTGTTCTGTTCCTGCCTATTTGGGTGCTAATCATTTCTGTTTCTCAAAATGCACAAGCTGAACCTCCAGGAATTCAGGAGGTTAGAACGGTGCACCACCAGAATTTGAATAAGAGAATTCTAATCGCACTAGTTGCTTGTTCTGCTCTTCTTGGTGGAGTCTTCCTATTCTTGTTATATGTTTGGTTCCATCGACATAAAAACTTAAGGCGCTCCAAAAGTAAAAGTCAAGAAACCATTGAGGCTGCAAAAGGGGAGACCACAAGCTCGGTTAATGCTAAACTTAACTACTCTAGGATGGCAGACAAGAAGAGTTCAGTTGCTATTTTTGACTATCAGCTGTTAGAGGTGGCAACAAACAGCTTTAGCACAAGTAATATTATGGGAGAGTGTGGTTCCAGAATCGTTTACAGAGCTCGTTTTGATGAACATTTCCAGGCAGCTGTGAAAAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATACGGCATCAGAATATCATAAAACTTATGGGTTATTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAATTGATGGAGAATGGATCTCTGGAAACTCAGTTGCATGGGCCTAATCGGGGGTCATCTTTAACTTGGCATCTCAGGTTAAGAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTCCACGAGCACAACAGTCCTCCTGTGGTTCATAGAGACCTTAAATCCTCTAATGTTCTTCTGGATTCTAACTTTAATGCCAAGTTATCAGATTTTGGATTTGCTATGGTTTCGGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATATGTGGCTCCTGAGTACATATCACATGGTATAAAAGCCATGCCTCAGCTAACTGACAGATCGAAGCTTCCAAGTATTCTGGATCCTGTTATCCGAGACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTAATAACAGACGTGTTGCACTCTCTCATTCCTTTGGTACCCGTTGAGCTTGGAGGTTCACTAAGAGTTACAGAACCAATCAGCAGCAGCTCAGAGAACTCTCATTGA 1143 0.4129 MNLLVLFLPIWVLIISVSQNAQAEPPGIQEVRTVHHQNLNKRILIALVACSALLGGVFLFLLYVWFHRHKNLRRSKSKSQETIEAAKGETTSSVNAKLNYSRMADKKSSVAIFDYQLLEVATNSFSTSNIMGECGSRIVYRARFDEHFQAAVKKADSDADREFENEVSWLSKIRHQNIIKLMGYCIHGESRFLVYELMENGSLETQLHGPNRGSSLTWHLRLRIAVDVARALEYLHEHNSPPVVHRDLKSSNVLLDSNFNAKLSDFGFAMVSGMQHKNMKMSGTLGYVAPEYISHGIKAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISSSSENSH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1545 380 Coils Coil 69 89 - -
Aed1g1545 380 SUPERFAMILY Protein kinase-like (PK-like) 101 354 IPR011009 -
Aed1g1545 380 Gene3D Transferase(Phosphotransferase) domain 1 198 358 - -
Aed1g1545 380 Pfam Protein kinase domain 129 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1545 380 PANTHER RECEPTOR-LIKE KINASE 14 296 - -
Aed1g1545 380 PANTHER RECEPTOR-LIKE KINASE 299 369 - -
Aed1g1545 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Aed1g1545 380 PANTHER OS01G0253100 PROTEIN 14 296 IPR045271 GO:0004714|GO:0006468
Aed1g1545 380 PANTHER OS01G0253100 PROTEIN 299 369 IPR045271 GO:0004714|GO:0006468
Aed1g1545 380 ProSiteProfiles Protein kinase domain profile. 125 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1545 380 Gene3D Phosphorylase Kinase; domain 1 84 197 - -
Aed1g1545 380 SMART serkin_6 125 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1545 Aed-Chr1 13765877 13770094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1545 1 279 Receptor kinase-like Gene Family AT1G80640 46.302 7.59e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Aed1g1545 Pkinase 4.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1545 - - gmx:100811188 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1545 1 13765877 13770094 Aed1g1545 1 13765877 13770094 ECH