Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1541 ATGTGGAGTTCAACTTCAAGCACAGCGATTGTTGCAGGGTCCTCCGACGAGGAACCTAGCGAATCGTCGTCATCCTCCTTCTCAACCTCTCTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACCCGTGGCCTCATGCATCTCTTCCCCGACGAGACTCCTTCTACTCTTCCAGTTGGACGGAAGGCTCTCGTTTGTGTTATGGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCATTCATTCAGCACATGCTAGAGATGCGCATTGTGAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGCTTTGACGACCAAGACTCCACCGACAGCTTCTACAAGCACTACAATTGTCGCCGTTTCTCTTCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACTTTAGACGTGCAGTACACTGGCTCCATTGAACACGCACAACCCTCCAATGCTACTTCAACTGAACAGCCTACTTGTCCTGTTTGCCTTGAGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGCTCCTGTATTTCTAAATGGGCTGATTCTTCTTGTCCTGTATGCCGCTACTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACCGAGAACCTGTGGATATGTGTTATATGTGGGTATGTTGGCTGTGGAAGATACAAGGGAGGACATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTTGAACTGAACACTCACTGTGCACATCCAGACAATGGATGTGGAAGTTGCAGCTGTGACGATAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAGTGAATTGCTTGTTACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTATTGCAAAAAGTAAAAGAAGAATCTGATAGAAAAATTTCCAAAGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATCCAGTCCAAGATTGACAGATGCAAGAAAGAGAAGAAATTCCTTGATGATGGTGGGAACACGGTTTCAGATGAGATTAAAGAAGGGATTGTCTTAGACAAATCAAAAGAATCCCCGTCAACTAGTAGCTCTGAGCTGGTGGGAAGAGACGCTTAA 1275 0.4384 MWSSTSSTAIVAGSSDEEPSESSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDETPSTLPVGRKALVCVMGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDDQDSTDSFYKHYNCRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCAHPDNGCGSCSCDDNAMSEAILNSKVEAIVNEYSELLVTQLENQKLYFESLLQKVKEESDRKISKAVQKAISLKQQKIQSKIDRCKKEKKFLDDGGNTVSDEIKEGIVLDKSKESPSTSSSELVGRDA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1541 424 MobiDBLite consensus disorder prediction 401 424 - -
Aed1g1541 424 Pfam Ring finger domain 168 209 IPR001841 -
Aed1g1541 424 CDD RRM_BRAP2_like 67 148 - -
Aed1g1541 424 ProSiteProfiles Zinc finger UBP-type profile. 203 296 IPR001607 GO:0008270
Aed1g1541 424 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Aed1g1541 424 SUPERFAMILY RING/U-box 185 284 - -
Aed1g1541 424 MobiDBLite consensus disorder prediction 1 28 - -
Aed1g1541 424 SMART Zf_UBP_1 219 268 IPR001607 GO:0008270
Aed1g1541 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 290 IPR013083 -
Aed1g1541 424 MobiDBLite consensus disorder prediction 408 424 - -
Aed1g1541 424 CDD RING-H2_BRAP2 167 210 - -
Aed1g1541 424 PANTHER BRCA1-ASSOCIATED PROTEIN 13 396 - -
Aed1g1541 424 Pfam BRCA1-associated protein 2 60 156 IPR011422 -
Aed1g1541 424 SMART ring_2 169 208 IPR001841 -
Aed1g1541 424 Pfam Zn-finger in ubiquitin-hydrolases and other protein 220 279 IPR001607 GO:0008270
Aed1g1541 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 211 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1541 Aed-Chr1 13748523 13751227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1541 165 209 C3H Transcription Factor Family AT1G72220 46.809 4.33e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1541 K10632 - gmx:100794688 768.459