Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1538 ATGGGTATGTCTGAGGAGCACATGGGTAGTCTTCTGGCAGTTTATTTTCAGATTCTAATCTGGGCAGTTGTGGCTTCTGTAAATGTTTCCTTTGAACAGAGAATGCTTTTGGCAGATGATATTGTTATGACCTGCTTGAAATTGATTGTCTATATATGTATTAACGTGGAAGATATTCCTCAAGAAACTGTCTGCAGAATTTGTTTGCTTGAACTGGAAGGTGTTAATACCTTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCATTGCTGCACCTAGTGTGTGCACTTAAATGGTTTAACATTAAAGGCAACCGAACATGTGATGTGTGCAATCGGAAGGTTCAGAATCTTCCAGTCAGTAAACTTTACAAGTGGCTTTTTAAAACGTGGTAA 396 0.3889 MGMSEEHMGSLLAVYFQILIWAVVASVNVSFEQRMLLADDIVMTCLKLIVYICINVEDIPQETVCRICLLELEGVNTFKMECSCKGELALLHLVCALKWFNIKGNRTCDVCNRKVQNLPVSKLYKWLFKTW 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1538 131 SUPERFAMILY RING/U-box 62 115 - -
Aed1g1538 131 SMART ringv_2 64 112 IPR011016 GO:0008270
Aed1g1538 131 Pfam RING-variant domain 65 111 IPR011016 GO:0008270
Aed1g1538 131 PANTHER OS02G0165000 PROTEIN 57 121 - -
Aed1g1538 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 121 IPR013083 -
Aed1g1538 131 ProSiteProfiles Zinc finger RING-CH-type profile. 57 118 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1538 Aed-Chr1 13740873 13741577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1538 60 118 C3H Transcription Factor Family AT2G37950 44.262 4.25e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1538 - - gmx:100789854 106.686