Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed1g1537 | ATGGATACTACTGGTGATTGGAGAGATAGTCTGTCACATGAGTCACGCCAAAGAATTGTCAACAAAATAATGGACACTTTAAAAAGACATCTTCCTGTTTCTGGCCCAGAGGGGTTGCTTGAACTTCGTAAGATGGCTCAAAGGTTTGAAGAGAAGATTTTAACTGCTGCTCCAAGCCAGTCTGATTATCTACGGAAAATATCTTCGAAGATGCTTGAAACGGAGACTAAATTCCAGGGCACTTTGGCTCACAATCACAACTCTTCAATACAACCTGTCAATCGTTTTACTGGTGTTAATGCGGAAGATATTCCTGAAGGAGCTGTCTGCAGAATTTGTTTGTCTGAATTGGAAGCTGCTAGTACCCTTAAATTGGAGTGTAGCTGCAGAGGTGAACTTGCATTGCTGCACCTTAAGTGTGCAGTTAAATGGTTTAACATTAAAGGCAACCGAACATGTGATGTGTGCAATCAGGAGGTTCGGAATCTACCTGTCGGTGATGTGTCCATGTGA | 513 | 0.423 | MDTTGDWRDSLSHESRQRIVNKIMDTLKRHLPVSGPEGLLELRKMAQRFEEKILTAAPSQSDYLRKISSKMLETETKFQGTLAHNHNSSIQPVNRFTGVNAEDIPEGAVCRICLSELEAASTLKLECSCRGELALLHLKCAVKWFNIKGNRTCDVCNQEVRNLPVGDVSM | 170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed1g1537 | 170 | CDD | RING_CH-C4HC3_MARCH | 110 | 157 | - | - | |
| Aed1g1537 | 170 | SMART | ringv_2 | 109 | 157 | IPR011016 | GO:0008270 | |
| Aed1g1537 | 170 | PANTHER | OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED | 4 | 88 | - | - | |
| Aed1g1537 | 170 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED | 4 | 88 | IPR044661 | GO:0003713|GO:0031490 | |
| Aed1g1537 | 170 | Pfam | KIX domain | 4 | 81 | IPR036546 | - | |
| Aed1g1537 | 170 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 102 | 163 | IPR011016 | GO:0008270 | |
| Aed1g1537 | 170 | ProSiteProfiles | Zinc finger RING-type profile. | 110 | 157 | IPR001841 | - | |
| Aed1g1537 | 170 | SUPERFAMILY | Kix domain of CBP (creb binding protein) | 3 | 79 | IPR036529 | GO:0003712|GO:0006355 | |
| Aed1g1537 | 170 | SUPERFAMILY | RING/U-box | 107 | 160 | - | - | |
| Aed1g1537 | 170 | Gene3D | Coactivator CBP, KIX domain | 6 | 84 | IPR036529 | GO:0003712|GO:0006355 | |
| Aed1g1537 | 170 | Pfam | RING-variant domain | 110 | 156 | IPR011016 | GO:0008270 | |
| Aed1g1537 | 170 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 165 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed1g1537 | Aed-Chr1 | 13737929 | 13739886 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed1g1537 | 110 | 163 | C3H Transcription Factor Family | AT2G37950 | 42.857 | 1.36e-11 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed1g1537 | K14972 | - | gmx:100792913 | 125.946 |