Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1504 ATGATGAAGAACGTTGTTCAATGGCATGGACGGCCCAACCACTACCACCAACACTTTTTTGGTAAGAAATTAAGTGACATGGCTGGAATTCTACTGCATGGGACCCTCCATGCCACAATCTATGAGGTGGATAACCTCAAGGCGGGAAGTGGTGGTAATTTTTTAACCAAGCTGGTACATAACATTGAGGAGACAGTTGGTATTGGGAAAGGAATTACTAAGCTATATGCAACCATTGATCTAGACAAGGCACGCATGGGAAGGACCAGAATCATAGAAAAGGAGCACACAAATCTTAAATGGTACGAGTCTTTTCACATTTACTGTGCTCATATGGCATCAAACATCATATTCACAGTGAAAGATGATAATCCTATTGGTGCAACCTTAATTGGAAGAGCATATGTCCCCGTCGAGGAGATCTTGGATGGGCCTATTGCATGGGATGTTTTGTTCAACTTTGAGCAAAGATGGAGGAAGCAAGGTGGAAAGGACTTACTGATCCCACTTAGAGACCTTGAAGATGTGATTATTCCCCCATCTCCAGTAACTGACCCTGAAGATCACGAGACATGGAACGTTCAGTTATTTAGATCCATTGATGGTGGAGCCGCTTCTGGGTTCCCAGAGACTCCTGAAGAAGCTGCTAGATCTGGACTGATTAGTGGGAAGGATAACATAATAGACCGTGGCATTCAGGATGGATATATTAACGCCATTCGACGTGCAAAGAATTTCATATACATTGAGAATCAGTACTTTCTCGGAAGCAGTTATGGTTGGAGTGCTGATGGCATTAAGCCAGAAGACATTGGTGCTTTGCATCTGATCCCGAGGGAGCTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCAGTGTGTATGTTGTGGTTCCAATGTGGCCAGAGGGTTATCCAGAGAAAGGAACGGTTCAGGCAATATTGGATTGGCAGAGGAGAACAATGGATATGATGTATAGGGATGTTGTTGGAGCACTAAAAGCCAAGGGTATTGAGGATGAAGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGTAATCGTGAGGCCTTCCTCTACCCTGAAAGTGAAGAATGTATTAAGAAGGTGAACCAGATTGGTGACAAGTATTGGGATATCTATACTAGTGAGGCACTTGAGCAAGACCTTCCGGGGCATCTGCTCCGGTATCCAATTGCGATATCGAGGGAAGGAAGTGTGACACAACTGGAAGCATTTGAGTTCTTCCCTGACACCAAGGCTCTTGTTCTTGGGGCCAAATCTGACTACATGCCACCTATACTTACTACTTAG 1323 0.4407 MMKNVVQWHGRPNHYHQHFFGKKLSDMAGILLHGTLHATIYEVDNLKAGSGGNFLTKLVHNIEETVGIGKGITKLYATIDLDKARMGRTRIIEKEHTNLKWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEILDGPIAWDVLFNFEQRWRKQGGKDLLIPLRDLEDVIIPPSPVTDPEDHETWNVQLFRSIDGGAASGFPETPEEAARSGLISGKDNIIDRGIQDGYINAIRRAKNFIYIENQYFLGSSYGWSADGIKPEDIGALHLIPRELSLKIVSKIEAGERFSVYVVVPMWPEGYPEKGTVQAILDWQRRTMDMMYRDVVGALKAKGIEDEDPRNYLTFFCLGNREAFLYPESEECIKKVNQIGDKYWDIYTSEALEQDLPGHLLRYPIAISREGSVTQLEAFEFFPDTKALVLGAKSDYMPPILTT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1504 440 PANTHER PHOSPHOLIPASE D 359 440 IPR015679 -
Aed1g1504 440 PANTHER PHOSPHOLIPASE D 30 144 IPR015679 -
Aed1g1504 440 PANTHER PHOSPHOLIPASE D 359 440 - -
Aed1g1504 440 PANTHER PHOSPHOLIPASE D 30 144 - -
Aed1g1504 440 CDD C2_plant_PLD 28 144 - -
Aed1g1504 440 Pfam C2 domain 34 144 IPR000008 -
Aed1g1504 440 Pfam Phospholipase D C terminal 359 430 IPR024632 -
Aed1g1504 440 PANTHER PHOSPHOLIPASE D 142 361 - -
Aed1g1504 440 SUPERFAMILY Phospholipase D/nuclease 215 332 - -
Aed1g1504 440 PANTHER PHOSPHOLIPASE D 142 361 IPR015679 -
Aed1g1504 440 SMART C2_3c 35 150 IPR000008 -
Aed1g1504 440 Gene3D C2 domain 30 165 IPR035892 -
Aed1g1504 440 Gene3D Endonuclease Chain A 207 368 - -
Aed1g1504 440 ProSiteProfiles C2 domain profile. 11 151 IPR000008 -
Aed1g1504 440 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 32 152 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1504 Aed-Chr1 13532796 13538498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1504 359 440 Phospholipase D Gene Family (Wang group) AT3G15730 70.732 3.26e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1504 K01115 - gmx:100786410 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1504 1 13532796 13538498 Aed2g0132 2 919667 923564 PCT