Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1489 ATGACGGTGAAGACAGAGTTGTGCAAGAGATTCAGGAGGGGCGTGTGCGTTGATGGCGCCAAATGCGACTACGCACACAGCGTTGCGGAGCTGAGACGACGCCAACCCAAACTATGCAGATTGTTCATTCAAAACAATTACAGATACTGCCCCTATGGACGCACTTGTCGTTTTCTTCACGCACTGCCACCTCCACCTGAAGTAGGAAAACTTGATCGCTACTCTTGTCCAGAATCCAAGAGAATGCGAACTTGTGCAGCTGCTCCACCAAGTCATGGCTACTCTTCTGCAGAACACAGGATAACGCAAACTTCTGTTGCTGCTGCGAATGCCTCAACTAGCACAGTGGCACCTACCAATGAACCATCGATATCATATCCTGTGAAGTTCATATTCAAGAACAACGACCTAAAAAGGATCAATCACATCTATGCTGATTGGATCTGA 447 0.4765 MTVKTELCKRFRRGVCVDGAKCDYAHSVAELRRRQPKLCRLFIQNNYRYCPYGRTCRFLHALPPPPEVGKLDRYSCPESKRMRTCAAAPPSHGYSSAEHRITQTSVAAANASTSTVAPTNEPSISYPVKFIFKNNDLKRINHIYADWI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1489 148 ProSiteProfiles Zinc finger C3H1-type profile. 33 63 IPR000571 GO:0046872
Aed1g1489 148 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 2 147 - -
Aed1g1489 148 PANTHER CCCH ZINC FINGER/TIS11-RELATED 2 147 IPR045877 GO:0003729
Aed1g1489 148 SUPERFAMILY CCCH zinc finger 2 32 IPR036855 GO:0046872
Aed1g1489 148 SMART c3hfinal6 33 62 IPR000571 GO:0046872
Aed1g1489 148 SMART c3hfinal6 2 28 IPR000571 GO:0046872
Aed1g1489 148 SUPERFAMILY CCCH zinc finger 34 63 IPR036855 GO:0046872
Aed1g1489 148 Gene3D - 2 63 - -
Aed1g1489 148 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 4 27 IPR000571 GO:0046872
Aed1g1489 148 ProSiteProfiles Zinc finger C3H1-type profile. 2 29 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g1489 zf-CCCH 6.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1489 - - gmx:102663279 202.986