Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1472 ATGTCATCAGAAAGTGACGTTGAGCTGACCTTAGGGCTTCCCGGCAGAAAACGTGGGTTCTCCGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCCATGAGTAATTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCGTATCTAAGAAAAGTGGATCTTCAAATCTACGAGAGTTATCACCATTTGATGACGGAATTAGAGACCATGTTTTCTGGCCTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGTTAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGATGAGGTCGTCTACTTCTTCAAAATGTACGGGTTCCACCTAG 462 0.474 MSSESDVELTLGLPGRKRGFSVVGWPPVRASRKNAMSNCKLVKVAVDGAPYLRKVDLQIYESYHHLMTELETMFSGLAIRNHLMNERKLMESVNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGPMRSSTSSKCTGST 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1472 153 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 21 136 - -
Aed1g1472 153 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 21 136 IPR003311 GO:0005634|GO:0006355
Aed1g1472 153 Pfam AUX/IAA family 38 140 IPR033389 -
Aed1g1472 153 Gene3D - 33 144 - -
Aed1g1472 153 ProSiteProfiles PB1 domain profile. 39 134 IPR000270 GO:0005515
Aed1g1472 153 SUPERFAMILY CAD & PB1 domains 31 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1472 Aed-Chr1 13329725 13333052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1472 26 134 B3 DNA Binding Superfamily AT3G61830 31.193 3.83e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed1g1472 AUX_IAA 4.6e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1472 K14484 - gmx:100500488 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1472 1 13329725 13333052 Aed1g1472 1 13329725 13333052 ECH