Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1471 ATGGAAAAAGAAGGTCTTGGGCTTGAAATAACTGAGCTGAGGTTGGGGCTTCCTGTAGCAGCAGCTGAGCCTGAGAAGAAGAAGAGAGTTTTCTCGGAGATTCAGCAAGGTGAAGGTGATGATGAAAACAACTCCTCCCAAGACCATAAAATTCCTCAAGTCGTGGGTTGGCCTCCGGTGTGTTCTTACCGCAAGAAGAATACTACTACCACCGTCAAAGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTCATTTAGCTATGCACAAGGGATATTCGGACCTTGCCTTGGCCCTCGACAACTTCTTCGCTTGCTATGGAATCGGCGAAGCGTTGAAGGATGCGGAGAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCCAAAGGGTCTTTAAAGGGATTTATAGAAGGCGTGACAAAATGA 537 0.4674 MEKEGLGLEITELRLGLPVAAAEPEKKKRVFSEIQQGEGDDENNSSQDHKIPQVVGWPPVCSYRKKNTTTTVKVSMDGAPFLRKIHLAMHKGYSDLALALDNFFACYGIGEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1471 178 ProSiteProfiles PB1 domain profile. 69 157 IPR000270 GO:0005515
Aed1g1471 178 Gene3D - 63 166 - -
Aed1g1471 178 SUPERFAMILY CAD & PB1 domains 67 154 - -
Aed1g1471 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 161 IPR003311 GO:0005634|GO:0006355
Aed1g1471 178 MobiDBLite consensus disorder prediction 28 51 - -
Aed1g1471 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 161 - -
Aed1g1471 178 Pfam AUX/IAA family 68 161 IPR033389 -
Aed1g1471 178 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1471 Aed-Chr1 13323208 13325692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1471 60 176 B3 DNA Binding Superfamily AT4G23980 31.624 2.14e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aed1g1471 AUX_IAA 2.3e-37 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1471 K14484 - gmx:100305535 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1471 1 13323208 13325692 Aed1g1471 1 13323208 13325692 ECH
Aed2g0167 2 1123827 1126104 Aed1g1471 1 13323208 13325692 PCT