Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1470 ATGGACGTTACTTCTCTGGGTTCAAATAGCAATACCCAAACCGACCAACACCCTTTGTTGATGGAGCAGCCGGGGACCCGTAATGGTCATCAGCATGTAATTGACATTACAAGGAATGGTGAAGCTCTAACAACGTCATCTCGTAATGATCAACACTCTGAAATGAATATGCCGCAGAATGAAGATCAACCAGTTGGGGATGCACAAGATTCCAGTCAACAAACATCTTCATCTTCTGCACCCCGATTAAACTCCAGAAATTCAGCTTCGTTGAGAAGAGGTGAGGGGTATGGTCATCGCGGAAGGAGTCCATTGAACTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATCGTCGTTTTGTCATTGTCCAGGAATGAAAATCCCCAGGCCCCATTATTTGCATGGATTGTTGGTTATGCATCTGGTTGTATTGCCACACTTCCCATTCTCTACTGGCGTTTTCGAAACCGTAATCAAAGCATTGAACGAGATACCTCTCAAGCATCTCAAGGATCTTCTGGAATCAATCCTCCAGATCGTTCTTATACTTCTATCTATGTTTCTCATGTCTCAGACGAAGAGAATAGTCATGCTACACAATCAGCCTCAAGAAACACTATAATTCCTGGAGCCTTTACATCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGCTGTATCGGATATGCAATGCCATTTATACTCTGTGCAACTATTTGTTGCTGCTTACCTTGTATAATTTCTGTTTTGGGCATTCGAGAGGATTTTTCTCAAAATAGAGGAGCAACAGTAGAATCAATTAATGCTTTACCAATCTTCAAGTTCAAATTGAAGAACAGTGAAAATGGTGATGACCAGGATGTCAATGCAGCTATAGATGAAGGTGGAATTTTGGCTGCAGGGACAGAAAAGGAGCGAATAATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCATGTTTTTCACGTAGTGTGTGTTGATAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAAATGAAGTTGGAATGAGTAATGGAGATTCCCCTTCAGCCTGGGACTCCAGTACTCATTAA 1251 0.4141 MDVTSLGSNSNTQTDQHPLLMEQPGTRNGHQHVIDITRNGEALTTSSRNDQHSEMNMPQNEDQPVGDAQDSSQQTSSSSAPRLNSRNSASLRRGEGYGHRGRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCIATLPILYWRFRNRNQSIERDTSQASQGSSGINPPDRSYTSIYVSHVSDEENSHATQSASRNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNSENGDDQDVNAAIDEGGILAAGTEKERIISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKNEVGMSNGDSPSAWDSSTH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1470 416 PANTHER PROTEIN, PUTATIVE-RELATED 1 412 - -
Aed1g1470 416 SMART ring_2 356 396 IPR001841 -
Aed1g1470 416 CDD RING-H2_RNF111_like 355 397 - -
Aed1g1470 416 MobiDBLite consensus disorder prediction 45 91 - -
Aed1g1470 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 405 IPR013083 -
Aed1g1470 416 SUPERFAMILY RING/U-box 347 403 - -
Aed1g1470 416 SMART ringv_2 355 397 IPR011016 GO:0008270
Aed1g1470 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 412 - -
Aed1g1470 416 MobiDBLite consensus disorder prediction 45 99 - -
Aed1g1470 416 Pfam Ring finger domain 356 397 IPR001841 -
Aed1g1470 416 MobiDBLite consensus disorder prediction 1 21 - -
Aed1g1470 416 ProSiteProfiles Zinc finger RING-type profile. 356 397 IPR001841 -
Aed1g1470 416 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1470 Aed-Chr1 13311602 13315337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1470 1 407 C3H Transcription Factor Family AT1G80400 55.981 2.99e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1470 - - gmx:100819729 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1470 1 13311602 13315337 Aed1g1470 1 13311602 13315337 ECH