Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1429 ATGTCTAGAGCATTGGAACATGATTACATAGGGTTGGCAGAGAATCCGTCAAGGTCAATGGACAAACTATCTTCATCTCTTAACTTGAAGGAGACAGAGCTGAGGCTTGGCCTCCCTGGTTGCGAGTCTCCAGAGAGAAAACCAGGTTCTGCGCTCTGTCTTTTTGGCAAAGAGCTGCAGAAGCAGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCCATTGTAACTGTCACTGAGGGACCTTCTCTGTTCTCTACTAGTAGAGGGCTCAATGTTACTGCTTTGGACACTCAAACTAACACCTCCACCAAAGACCTTGCTGCTGCAGTTCCTCAATCTGCCAAACCAGTTCAGGAAAACAATGATCATGATCAGCTTGCTGCGACAAATGGCCATGCCAGTGCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTCCGAAAGAACACGATGGCCTCTAATTTGACAAAGAACAATGAAGAAGCTGAGGGAAAATCAGGATTTGGTTGTCTCTATATAAAAGTCAGTATGGATGGTGCCCCTTATCTTAGAAAGGTTGATCTCAAAACCTATAGTAACTATATGGAACTTTCCTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGATCTGAATATGTTCTTACATATGAAGATAGAGACGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCGCTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAATCTAGGAGCCAAAACTAA 888 0.4595 MSRALEHDYIGLAENPSRSMDKLSSSLNLKETELRLGLPGCESPERKPGSALCLFGKELQKQKAGAKRGFSDAIVTVTEGPSLFSTSRGLNVTALDTQTNTSTKDLAAAVPQSAKPVQENNDHDQLAATNGHASAPAAKAQVVGWPPIRSFRKNTMASNLTKNNEEAEGKSGFGCLYIKVSMDGAPYLRKVDLKTYSNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDRDGDWMLVGDVPWEMFADSCRRLRIMKGSEAIGLAPRAMEKSRSQN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1429 295 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 287 IPR003311 GO:0005634|GO:0006355
Aed1g1429 295 SUPERFAMILY CAD & PB1 domains 175 276 - -
Aed1g1429 295 Pfam AUX/IAA family 31 286 IPR033389 -
Aed1g1429 295 Gene3D - 170 289 - -
Aed1g1429 295 ProSiteProfiles PB1 domain profile. 175 277 IPR000270 GO:0005515
Aed1g1429 295 PANTHER AUXIN-RESPONSIVE PROTEIN 18 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1429 Aed-Chr1 13052378 13055030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1429 177 289 B3 DNA Binding Superfamily AT1G19850 32.174 2.57e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aed1g1429 AUX_IAA 1.2e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1429 K14484 - gmx:100806699 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1429 1 13052378 13055030 Aed1g1429 1 13052378 13055030 ECH