Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1419 ATGACCGGAACAATAAGGTGTCACGAAACTCCTAGCAGCAGCAACTCCTCTGTTTCAAAAGAAGAACCCAAGAAAACAGAGAGCCCGAAACAGAGCAAGGTAAAGAGAAACAGAGACCCCAGCAACAGCAAGCATCCTGTTTACCACGGCGTGCGAATGCGCAATTGGGGCAAATGGGTATCAGAAATTCGCGAGCCACGCAAGAAATCACGAATCTGGCTCGGAACTTTTGCCACCCCTGAAATGGCGGCACGTGCGCACGATGTTGCGGCTTTGAGCATAAAGGGACACACAGCGATTCTCAATTTTCCGAACATTGTAAACATGCTTCCCAGACCTGTCACGTGCAGCCCACGTGACATCCAAGCGGCGGCCGCGGAAGCAGCGGCGATGGTGGAGTTGGAGCGGGAGAGCTCGCAGGCGGAGGAAGAGTCGTCGGAGCTGAGCGAGATTGTGGAGCTTCCGAACATAGAAGAGAGTTTCGAGTCGGGTGAGTTGAGAAGTGAGTTCGTGTTGATCGAGTCAGTGGATAACAGTTGGGTGTACCCAGTGGGGAGCATTTGCGAGATGAATATGATGATGCTTGGGGAACATGACTGTGGATTCTTCCAATTTGGGACCGATCACCAAAAACCATGTTCCGTTTAA 648 0.517 MTGTIRCHETPSSSNSSVSKEEPKKTESPKQSKVKRNRDPSNSKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAILNFPNIVNMLPRPVTCSPRDIQAAAAEAAAMVELERESSQAEEESSELSEIVELPNIEESFESGELRSEFVLIESVDNSWVYPVGSICEMNMMMLGEHDCGFFQFGTDHQKPCSV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1419 215 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Aed1g1419 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 211 - -
Aed1g1419 215 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Aed1g1419 215 MobiDBLite consensus disorder prediction 1 48 - -
Aed1g1419 215 Pfam AP2 domain 46 97 IPR001471 GO:0003700|GO:0006355
Aed1g1419 215 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Aed1g1419 215 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Aed1g1419 215 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Aed1g1419 215 MobiDBLite consensus disorder prediction 1 19 - -
Aed1g1419 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 211 - -
Aed1g1419 215 Coils Coil 124 151 - -
Aed1g1419 215 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Aed1g1419 215 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Aed1g1419 215 MobiDBLite consensus disorder prediction 20 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1419 Aed-Chr1 13015873 13016520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1419 10 183 AP2-EREBP Transcription Factor Family AT5G11590 54.545 4.01e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed1g1419 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1419 K09286 - gmx:100784419 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1419 1 13015873 13016520 Aed1g1419 1 13015873 13016520 ECH