Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1413 ATGGCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGGAAATATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGACTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTCATTCGTGAGTGCCCTATTCTCTCCAACATTGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCCTCGCGTCTGCAAGCTGTTAATAGGAAGCTCACAGCCATGAATAAGCTGCTCATGGAGGAGAACGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTCTATGAAAATGGCTACTTTCGCCAACATACCCAAAATACTGCGCTTCCGACCAAAGACACAAGCTGTGAGTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAACTCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTATGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGTGGCCTAGTGGGTCTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCAAACGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACACTGGCACCTGCTCGTGACTTCTGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGGAGCCTAGTGATTTGTGAGAGGTCACTTAAAAATACACAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTTCCCAGTGGGTACCTGATAAGACCCTGTGAAGGTGGTGGTTCTATCATCCACATTGCCCTACGTCAACTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGGAGACGACCAGCCGCTCTACGAGCACTTGGCCAGAGACTCAGCCGAGGCTTCAATGAGGCAGTCAACGGGTTCACTGATGAGGGATGGTCAATGATTGCCAATGATGGTGTTGATGATGTTACAGTTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCATCTGTCAGCAATGCAGTCTTATGTGCCAAAGCTTCAATGCTATTACAGAATGTGCCTCCAGCTATTCTACTAAGGTTCCTACGGGAACATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTGGCTTACCTGGATCTCGGGTTGGAAATTATGGGGGTCAAGTTATTCTTCCCCTAGCCCACACTATCGAGCATGAGGAGTTTCTGGAAGTTATTAAGTTGGAAGGAATTGCTCATTCTCCGGAAGACACAATAATGCCCAGGGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAAAATGCTGTTGGAACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGAAAGGAAGCATCCAACCCAAATCGCACCCTTGACCTGGCATCTGCCCTTGACATTGGCCCCACTGGAAACAGAGCATCAAATGATTGTTCTGGAAATTCTGGCTCTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAACATGTAGCATCCATGGCACGACAATATGTTCGTAGCATTATATCATCTGTCCAAAGGGTAGCATTGGCACTTTCACCTTCTCATTTGAGTTCACAAGCTGGGCTAAGAACACCACTGGGTACTCCTGAAGCGCAAACGCTTGCTCGCTGGATCTGCAATAGTTATAGGTGCTACTTGGGTGTCGAGCTTCTTAAATCTAACAATGAGGGGAACGAATCTTTGCTCAAGTCCTTGTGGCACCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCGGTGTTCACTTTTGCCAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCTTTACAGGATATAACATTAGAGAAAATATTTGATGATCATGGCCGAAAGATTCTGTGCTCAGAGTTTCCCCAAATTATTCAACAGGGTTTTGCATGCCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCTATCTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATCTGCTTTATGTTTGTGAACTGGTCTTTTGTCTGA 2418 0.4657 MAMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTALPTKDTSCESAVTSGQRSLTTQHPPRDASPAGLMSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEAVNGFTDEGWSMIANDGVDDVTVLVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCGLPGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDIGPTGNRASNDCSGNSGSMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCICFMFVNWSFV 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1413 805 Gene3D - 12 82 - -
Aed1g1413 805 Coils Coil 71 112 - -
Aed1g1413 805 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 329 805 IPR044830 GO:0003700
Aed1g1413 805 Gene3D - 194 363 IPR023393 -
Aed1g1413 805 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Aed1g1413 805 SUPERFAMILY Bet v1-like 159 329 - -
Aed1g1413 805 SMART HOX_1 13 79 IPR001356 GO:0003677
Aed1g1413 805 MobiDBLite consensus disorder prediction 126 149 - -
Aed1g1413 805 CDD homeodomain 16 76 IPR001356 GO:0003677
Aed1g1413 805 ProSiteProfiles START domain profile. 150 359 IPR002913 GO:0008289
Aed1g1413 805 MobiDBLite consensus disorder prediction 126 154 - -
Aed1g1413 805 SMART START_1 159 380 IPR002913 GO:0008289
Aed1g1413 805 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 329 IPR044830 GO:0003700
Aed1g1413 805 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Aed1g1413 805 CDD START_ArGLABRA2_like 154 329 - -
Aed1g1413 805 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Aed1g1413 805 CDD bZIP 68 107 - -
Aed1g1413 805 Pfam MEKHLA domain 662 804 IPR013978 -
Aed1g1413 805 Pfam START domain 160 329 IPR002913 GO:0008289
Aed1g1413 805 PANTHER CLASS III HD-ZIP PROTEIN CNA1 329 805 - -
Aed1g1413 805 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1413 Aed-Chr1 12978708 12985994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1413 1 757 Homeobox Transcription Factor Family AT1G52150 83.460 0.0 1359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed1g1413 START 2.3e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1413 K09338 - zju:107428556 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1413 1 12978708 12985994 Aed1g1413 1 12978708 12985994 ECH
Aed1g1413 1 12978708 12985994 Aed2g0223 2 1472483 1479547 PCT