Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1408 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGGCACAACTCCCGGACATGCCCATCTTCGCGGGGGGGAGGCGTGAAGCTGTTCGGGGTCAGGCTGACGGATGGATCATTCATAAAGAAGAGCGCGAGCATGGGAAACCTGAACCTCTCTTCCTCCGCCGCACATCATCAATTCCATTCTTCTCCTTCTTCTTCCAACCTCAACCTCAACCCCAGCTCCCCCTTCTCTGACCCGCCCCACGAACCCGATGGCTACTTGTCCGATGACCCCGCCCATGTCTCCACCTTCGCTAACCGCCGCGCTGAAAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAACATCGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCTCGTAATTTTGTTGTATCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGGCAGACTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATATGTCTTCAGATCAACCTCTAGTGCCAGAAGAACAAGTGCTGCTTCCTCCTTCCGAGAACTCACAACCTTGCAATGGAAAATCACAGCCTTCATTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTACTTCTCAAGAAAATGTGCAACAGACCAATGAAACTATGATGGGATCAGACGAACTGACACCAATGGCTCCTCATGGATTCTTTCCCACTTATTTACCTGTTCCATTTCCCATATGGCCATCAATTGCGGCTCCCCCCTATGAAGAAGTTAAGGGAGGAGAAACATCCCGCCATCAGATCCACAAGCCAATTGCAGTCGTACCCAAGGAACCTGTGAATGTTGACGAACTTGTGGGAATGTCTCATCTAAGCATCGGTGAAGCACAAGTACGTGATAGAGAGCCTTCCACGCTTTCCTTAAAGGTGTTAGGAGAGCCCTCAAGACAGTCAGCATTCCATGCAAATGCTCCAGTTAGTAGTTCGAATTTAAACAATGGCAAGAACAACGCAATTCAAGCCATTTGA 1065 0.4911 MTRRCSHCSNNGHNSRTCPSSRGGGVKLFGVRLTDGSFIKKSASMGNLNLSSSAAHHQFHSSPSSSNLNLNPSSPFSDPPHEPDGYLSDDPAHVSTFANRRAERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQTHATRRKRRSSLFDMVPDMSSDQPLVPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEFEPMETTSQENVQQTNETMMGSDELTPMAPHGFFPTYLPVPFPIWPSIAAPPYEEVKGGETSRHQIHKPIAVVPKEPVNVDELVGMSHLSIGEAQVRDREPSTLSLKVLGEPSRQSAFHANAPVSSSNLNNGKNNAIQAI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1408 354 ProSiteProfiles Myb-like domain profile. 102 154 IPR001005 -
Aed1g1408 354 Pfam Myb-like DNA-binding domain 109 154 IPR001005 -
Aed1g1408 354 PANTHER TRANSCRIPTION FACTOR KUA1 1 348 - -
Aed1g1408 354 MobiDBLite consensus disorder prediction 56 75 - -
Aed1g1408 354 SMART sant 106 156 IPR001005 -
Aed1g1408 354 MobiDBLite consensus disorder prediction 334 354 - -
Aed1g1408 354 Gene3D - 108 159 - -
Aed1g1408 354 SUPERFAMILY Homeodomain-like 104 158 IPR009057 -
Aed1g1408 354 ProSiteProfiles SANT domain profile. 110 158 IPR017884 -
Aed1g1408 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 158 IPR017930 -
Aed1g1408 354 PANTHER OS01G0187900 PROTEIN 1 348 - -
Aed1g1408 354 MobiDBLite consensus disorder prediction 1 21 - -
Aed1g1408 354 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 105 157 IPR006447 GO:0003677
Aed1g1408 354 MobiDBLite consensus disorder prediction 1 22 - -
Aed1g1408 354 CDD SANT 109 154 IPR001005 -
Aed1g1408 354 MobiDBLite consensus disorder prediction 56 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1408 Aed-Chr1 12938280 12941688 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g1408 Myb_DNA-binding 8.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1408 - - gmx:778036 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1408 1 12938280 12941688 Aed1g1408 1 12938280 12941688 ECH