Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1404 ATGAACTGCACCGACACAACTCGTGTTTGCACATCTTTCTTGGCATTCAAGCCTCATCCAAACCAAACCTTGGCTGTGATACAAAGCATGTTTGACGTGTTGCCCGGTGAGATCACAGTTGAAGGAAATGGCTGGGATTATATATTCATCAGAAAAAACTGTTCTTGTGCTGCTGGTATGAAGAAGTATGTGTCTAACACCACGCTCACTGTGAAATCCAATGGAGGGCTTGAGCATGATTTGGTGATGGAAGCCTATGACGGGCTTGCTCTCTTACCCAACAAGCCGCCACCGCCGCCGCCACGTTGGGCAAGAAAAGGTGGTGTCATATCTTTGAGCTTGTTCTGCAGCTGCTCCAGTGGACTGTGGAACTATCTGATGAGCTATGTGATCAGAGATGGGGACAGTGTTGAATCACTAGCAAGCCGGTTTGGTGTTAGTATGGATAGCATTGAGACAGTGAATTCCATTCACAATCCTGATAGCCTCACTGTTGTTCCTGGTGAGCTTTACCACTTGAAGAATGATACTCCTCCAGCTTCAGTCCCTTCGCCATCTGTTGATAATTTTTTAGCTAATCAAGTTAACCAGAAAGCTCATGTACCCCATGAATGGATCGTAGGAGGTTTAGGGGCTGGTCTTGCTCTGATAATATTAAGCATTATTGTGTGTGTGTTCCTGAGATCACCCAATTGTTTGGTTGAAGCCAGAAATAATGCAAAAGATTCTGCAGGAAAGATCTCTAATAAGTTCTCTGTTTTTGGGAATCCAAGTTTGTTTTGTGGATGTGGCAAACCTATGGACCAAAAGCAAACTGATGGTGAATCCAGTAGTCACCAAATTACTGTTACCAAAGCATCAACTCTAATACCTGACATGTTGGACATGGATAAGCCTGTAGTTTTTTCATATGAAGAGATTTTTTCTTCAACTGATGGTTTCTCTGATTCAAATTTACTTGGGCACATATATGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCCATTAAAAGAATGAAAGCAACTAAAACTAAAGAATTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCAAATCTGGTAGAACTGATCGGCTATGCTGCTAGTCATGATGAGTTTTTCCTTATTTATGAATTTGCTCTGAAGGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAGTAAGGGTCATTCACCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCATACAAAAACTCGTTACGTCCATCAAGATATCAACACAAACAACATTTTACTTGATGCTTCTTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAGCTTGTAGGTAAAACGAATGAGGGAGAAACAGCAGCAACCAAAATTGTAAATGCATATGGATATCTTGCTCCAGAATGTATTACATGTTCACGAAGGCAGGCAAAGTTAATATTTGTTAAATTGCAGATGTTGGCAGTTCTTAGGAACTCAGCTGATACTGTGAGCATGTCAAGCACCAGAAAGGTCGTTGACCCTATTATGATGGATCTGTATCCCCATGATTGTGTATATAAGATGGGTATGGTGGGAAAGCAATGTGTGGAAGAGGATCCTGTATTACGCCCTGATATGAAACAAGTTGTAATCTCCCTCTCACAAATCCTGCTCTCTTCTGTTGAGTGGGAAGCCACTCTTGCTGGGAACAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGATAG 1776 0.4212 MNCTDTTRVCTSFLAFKPHPNQTLAVIQSMFDVLPGEITVEGNGWDYIFIRKNCSCAAGMKKYVSNTTLTVKSNGGLEHDLVMEAYDGLALLPNKPPPPPPRWARKGGVISLSLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETVNSIHNPDSLTVVPGELYHLKNDTPPASVPSPSVDNFLANQVNQKAHVPHEWIVGGLGAGLALIILSIIVCVFLRSPNCLVEARNNAKDSAGKISNKFSVFGNPSLFCGCGKPMDQKQTDGESSSHQITVTKASTLIPDMLDMDKPVVFSYEEIFSSTDGFSDSNLLGHIYGSVYYGLLRDQEVAIKRMKATKTKEFMSEIKVLCKVHHANLVELIGYAASHDEFFLIYEFALKGSLSSHLHDPQSKGHSPLSWITRVQIALDAARGLEYIHEHTKTRYVHQDINTNNILLDASFRAKISDFGLAKLVGKTNEGETAATKIVNAYGYLAPECITCSRRQAKLIFVKLQMLAVLRNSADTVSMSSTRKVVDPIMMDLYPHDCVYKMGMVGKQCVEEDPVLRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1404 591 PANTHER BNAA06G02020D PROTEIN 1 492 - -
Aed1g1404 591 Pfam LysM domain 129 165 IPR018392 -
Aed1g1404 591 Pfam Protein tyrosine and serine/threonine kinase 324 561 IPR001245 GO:0004672|GO:0006468
Aed1g1404 591 SUPERFAMILY Protein kinase-like (PK-like) 290 563 IPR011009 -
Aed1g1404 591 SUPERFAMILY LysM domain 127 164 IPR036779 -
Aed1g1404 591 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 501 591 IPR044812 GO:0019199|GO:0045087
Aed1g1404 591 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 1 492 IPR044812 GO:0019199|GO:0045087
Aed1g1404 591 ProSiteProfiles Protein kinase domain profile. 314 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1404 591 Gene3D Transferase(Phosphotransferase) domain 1 386 576 - -
Aed1g1404 591 CDD LysM 128 165 IPR018392 -
Aed1g1404 591 Gene3D Phosphorylase Kinase; domain 1 288 384 - -
Aed1g1404 591 Gene3D LysM domain 127 169 IPR036779 -
Aed1g1404 591 ProSiteProfiles LysM domain profile. 127 173 IPR018392 -
Aed1g1404 591 PANTHER BNAA06G02020D PROTEIN 501 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1404 Aed-Chr1 12906567 12911692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1404 1 591 Receptor kinase-like Gene Family AT1G51940 55.316 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Aed1g1404 PK_Tyr_Ser-Thr 8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1404 - - gmx:100781752 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1404 1 12906567 12911692 Aed1g1404 1 12906567 12911692 ECH
Aed1g1404 1 12906567 12911692 Aed2g0234 2 1557615 1563496 PCT