Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1402 ATGGATGAAAGGTCAAGAAACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAAATGAACAGAAACAAAGGAAAGTCCTCAGAAGAAAGAAAACTTGAACTGAGGCTTGGTCCACCTGGTGAAGATTGGTCTCTCGGTGGTAAAATGATGAAGAACAGCAATACAGAAAGAGAAGAATCCCTTCTATCTCTTGGTTGTTTCTCTCCTACTACTAATAACATGTCTCATGCAGTACTGAGCCCCAACCCCAACAACAACAACAACATGAATGGGTTTCAAAGCAAGGCCTCTCCATGGCAAAACTACCACCACCAGAATAACAACAAAGCCTCTTCACCGTTTCTTCAGTTCCCACAAACCCAACCTGTGATGGGAAAAGATGCATCAGAAAACTGTTGCCCTAAGGTGGTAGAGTTGCAGAATGGTGGTGATGTCAAAGTGTTCTCTCCCTCTCCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGTGCTTCCAAGCCACCTCCTGAGTCTCAGCAGCACAACAACAAGGTGGTTGCTGCTACTGCTGGTAAAAAACCTGTTGAGAACTATGCTGCTAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCAATAGGGAGGAAAGTGGACCTCAATGCTTACGACAACTATGAAAATCTCTCTTCTGCTGTGGACGAACTGTTCAGAGGTCTTCTTGCTGCTCAAAGGGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGAGAGCTATTACGGGCTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTACTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAAGAGAAGATAACCACTTGA 1053 0.4577 MDERSRNEASPQLLDLISNEREWQMNRNKGKSSEERKLELRLGPPGEDWSLGGKMMKNSNTEREESLLSLGCFSPTTNNMSHAVLSPNPNNNNNMNGFQSKASPWQNYHHQNNNKASSPFLQFPQTQPVMGKDASENCCPKVVELQNGGDVKVFSPSPSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPPPESQQHNNKVVAATAGKKPVENYAANKGLFVKINMDGVPIGRKVDLNAYDNYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEERAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGSKQEKITT 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1402 350 Gene3D - 224 344 - -
Aed1g1402 350 MobiDBLite consensus disorder prediction 22 43 - -
Aed1g1402 350 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Aed1g1402 350 SUPERFAMILY CAD & PB1 domains 223 330 - -
Aed1g1402 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 347 - -
Aed1g1402 350 MobiDBLite consensus disorder prediction 1 53 - -
Aed1g1402 350 Pfam AUX/IAA family 38 337 IPR033389 -
Aed1g1402 350 MobiDBLite consensus disorder prediction 153 175 - -
Aed1g1402 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 347 IPR003311 GO:0005634|GO:0006355
Aed1g1402 350 MobiDBLite consensus disorder prediction 153 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1402 Aed-Chr1 12887631 12891881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1402 233 344 B3 DNA Binding Superfamily AT4G23980 33.929 7.61e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed1g1402 AUX_IAA 3.2e-71 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1402 K14484 - gmx:100799244 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0235 2 1569666 1572930 Aed1g1402 1 12887631 12891881 ECH
Aed1g1402 1 12887631 12891881 Aed1g1402 1 12887631 12891881 ECH
Aed1g1402 1 12887631 12891881 Aed2g0235 2 1569666 1572930 PCT