Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1401 ATGGGCAAAGCTGCAAGGTGGTTGAAGGGGTTGTTGGGAAAGAAGAAAGAGAAGGACTGCTCTGGCTATTCGGGCTCATTGGATCTTGACAAGAGGGAAAAGAAACGAACAGAGAAGGATGAAGTGAGACACATTACTCAAACCAGTGTTACCACCTTTGATCGTACTAGGCTCAGATCCTATGTTGCCAAAAAAGAAAATGTGAGATCAAAAAGCTGTGATAGAGCCACCTTGCTTATTGCAAGCAGGGAGGGCTGGGCTGCTGTGTTGATTCAATCCTTTTTCAGAGGTTATTTGGCGCGTAAGGCTCTTAGAGCACTCAAAGGATTGGTTAAAATACAAGCTCTTGTTAGAGGGTATCTAGTTCGGAAAAGGGTTGCTGCAACTCTTCACAGTATGCAAGCTATGATAAGATCTCAAGCTGTTGCTCGATCAGTGCGAGCTCGTTGTTCCATCGACAAGGAGAATAGACATCATCCACAAACTTCTTCCAGAAAATATGTGGTTGACACTCACAAGCCACATTTAAAAGGTAGGAGTAGGAGCATTAACAGTGCAATGTCAGAATGTGGAGAAGACTCGTTGCACTATCATCAAGCAATGTCATCTTCTCTTCGTTGTCGTCCAGTTCAAGGTAGAATCTCACTTCATGAGAGGCAGCATCAGCAGCCTCAAGAGTTTGAATGGCTCTTCAATGTTGATGAAGGCAACAACAAGTTCTCCACAGCACACAACACGCCTCGTTTACCAAAATGTATGCTACCAGATACCCCAGTGAAGAGTGTTTGTGGAGAAACAGAAACCTTCTTTAGAACTTGCTCCAATTTCCCTAACTACATGTCAAATACTCACTCTTCTAAGGCTAAACTAAGGTCCCACAGTGCTCCAAAGCTAAGACCTGAACTCAAGAAAAGGCTTTCAATCAATGAAATGATGGCAGCAAGAAATAGTGTTAGTGGTGTTACAATGCAGTGGTCATCATCCAACCCCAACACTCAAGATTACTGTTTCTTTGAAAGGGTTATTTAG 1029 0.4315 MGKAARWLKGLLGKKKEKDCSGYSGSLDLDKREKKRTEKDEVRHITQTSVTTFDRTRLRSYVAKKENVRSKSCDRATLLIASREGWAAVLIQSFFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLHSMQAMIRSQAVARSVRARCSIDKENRHHPQTSSRKYVVDTHKPHLKGRSRSINSAMSECGEDSLHYHQAMSSSLRCRPVQGRISLHERQHQQPQEFEWLFNVDEGNNKFSTAHNTPRLPKCMLPDTPVKSVCGETETFFRTCSNFPNYMSNTHSSKAKLRSHSAPKLRPELKKRLSINEMMAARNSVSGVTMQWSSSNPNTQDYCFFERVI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1401 342 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 169 342 - -
Aed1g1401 342 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 168 - -
Aed1g1401 342 Pfam IQ calmodulin-binding motif 111 125 IPR000048 GO:0005515
Aed1g1401 342 Pfam IQ calmodulin-binding motif 86 105 IPR000048 GO:0005515
Aed1g1401 342 Pfam Protein of unknown function (DUF4005) 241 322 IPR025064 -
Aed1g1401 342 ProSiteProfiles IQ motif profile. 108 135 IPR000048 GO:0005515
Aed1g1401 342 SMART iq_5 106 127 IPR000048 GO:0005515
Aed1g1401 342 SMART iq_5 83 105 IPR000048 GO:0005515
Aed1g1401 342 PANTHER IQ-DOMAIN 5-RELATED 169 342 - -
Aed1g1401 342 PANTHER IQ-DOMAIN 5-RELATED 1 168 - -
Aed1g1401 342 ProSiteProfiles IQ motif profile. 87 112 IPR000048 GO:0005515
Aed1g1401 342 Gene3D - 110 160 - -
Aed1g1401 342 Gene3D - 50 109 - -
Aed1g1401 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 127 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1401 Aed-Chr1 12877001 12878591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1401 1 323 IQD Protein Family AT3G16490 36.476 8.88e-60 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1401 - - gmx:100797296 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1401 1 12877001 12878591 Aed1g1401 1 12877001 12878591 ECH
Aed1g1401 1 12877001 12878591 Aed2g0238 2 1587251 1591029 PCT