Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1399 ATGGAGGATAATGTTGTGAGGGGTTGGGTGTTGGAGTTCATTCTTGGGTGTCGGAAGCCGGTTGTTGAGAGCAATCTAATCATGAGATTGATTCCATTAGTCCCCTCTTCAGACTTTGACTCCTCTTCCTCTTTGAGGAAGAGGATTCTTGTGAGAGCCATTCAAGACATTTACTACACCGTCCCCGAAGGCCTTCTCCGAATGCTTGAGGTTCTCGAGGAACTCCACAGACACGACGGCGCTCCGATCACCGCCGCCATGAAAGACGCCTACTGCGCCGTCGCGGTGGACTGCACGCTCAAGTACCTGCCAGTCGAAAACCCTGCCTACCTCGGCGCGGTGAACAGGATATGGCACAACAGGGTAGGGTTAATGAACAGCGGGAAAGGAAGCCTTCTGCCCTCGCCGGAGTTGGAGCGGTGGAAAACCGACATTGAAGCTTCCCTCTCGGACTTGCAAGTGAGGGAGAGGTTGGCCTTGGCCTCCGTTGATACCAGAAGGGACGCCGTCACCAAGCTCACAGCTTTTTTGGTCGAAGAATGGACCAATTTGGGGCCTTCGTTTCTAGAGCTAGCGGCGTCGCAGCACATTAACATCAGTGCCCTAGCCACCAATCACCACCAGAAAGTGTGTCCAACAGATGCAGATGTACCTTGCCCCCATAACAATGAGCGGGGTGGTACATCTAATCATGACAAGGTATTGAAAGGGAATAAACCAACTAACATTACAAAGAACAATCAACGGAAAAGATGGAGTCAGTTGGAAGAGGAGACCCTAAAGACTGCCATAGATGAGTTTGGCCACGGAAATTGGAAGTTAATCTTAGAAACTCACAAACATATATTTAAAGACAGAACTCAGGTTAATTTGAAAGACAAGTTCAGGAGCATGAAGTTGAGGTAG 906 0.4967 MEDNVVRGWVLEFILGCRKPVVESNLIMRLIPLVPSSDFDSSSSLRKRILVRAIQDIYYTVPEGLLRMLEVLEELHRHDGAPITAAMKDAYCAVAVDCTLKYLPVENPAYLGAVNRIWHNRVGLMNSGKGSLLPSPELERWKTDIEASLSDLQVRERLALASVDTRRDAVTKLTAFLVEEWTNLGPSFLELAASQHINISALATNHHQKVCPTDADVPCPHNNERGGTSNHDKVLKGNKPTNITKNNQRKRWSQLEEETLKTAIDEFGHGNWKLILETHKHIFKDRTQVNLKDKFRSMKLR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1399 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 301 IPR017930 -
Aed1g1399 301 Gene3D - 241 300 - -
Aed1g1399 301 MobiDBLite consensus disorder prediction 224 251 - -
Aed1g1399 301 PANTHER MYB TRANSCRIPTION FACTOR 2 210 - -
Aed1g1399 301 PANTHER MYB TRANSCRIPTION FACTOR 2 210 - -
Aed1g1399 301 SUPERFAMILY Homeodomain-like 248 298 IPR009057 -
Aed1g1399 301 SMART sant 248 301 IPR001005 -
Aed1g1399 301 CDD SANT_TRF 250 299 - -
Aed1g1399 301 ProSiteProfiles Myb-like domain profile. 244 299 IPR001005 -
Aed1g1399 301 Pfam Myb-like DNA-binding domain 249 298 IPR001005 -
Aed1g1399 301 MobiDBLite consensus disorder prediction 234 249 - -
Aed1g1399 301 PANTHER MYB TRANSCRIPTION FACTOR 230 299 - -
Aed1g1399 301 PANTHER MYB TRANSCRIPTION FACTOR 230 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1399 Aed-Chr1 12866986 12868772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1399 5 197 Single Myb Histone (SMH) Gene Family AT1G15720 31.818 6.27e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g1399 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1399 - K11111 gmx:100777809 224.557