Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1389 ATGGATGGTCTAAGTTGGGATAATGCCTCATCACAACTTGTTGCTAACACACCGATCTTGTGGAGCACTCAGCTTCAAGACCTTGAAGGAGACTATCATCATTCCATGCCCCACCTAAGTTCAAGTGTTCTCAATCAAACAGGCTATCCATATCCCAGTTCTGAAAAAGTGAGGGGCATGGTTCAGTCATCCACTACTTCTGAGATAATGAGTATGATGCCAAACACAAATCTGCCACAAAGAACAGAAACCATGCCTGTGAAATCAGTGGTAGCTGGAGCCAGTTGGGAAGAAGCTTTAACATCCCAATCATGCCAGTCCCTTTCGGTGAATGTAAACCAAACTAGCAATTATGCAGCAGATTTCAACATGGCCCACCAGCAACAACACCTCACCAATGCCACACAAAACGGCAAGGCTACTACCTGCTCTCTTGATGAGTCACTTGATTGCTTGCTTTCAGCTTCTAATAATAGCAACACAGACACGTCTGTCGAAGATGATGGGATTTCCATGATTTTATCTGACTGCAGAAACCTATGGAATAACTTCAGTTATGGCAGTACTGCAGCTAATTCCTCTGGTGAATCTGATCAGAGCAATGCTTCCAATGCCAGAAACAGTGACATGCGATATCCATCCGTCAGTGAGCTGGATGAATCAGTGTCTCAAAGTTTCTCTGATCAATATCTCAGTCAAGGAAGAATTATAGTAGATTCTGAAGTTAATTGCAGAAAAAGGAGCAGTAGTACTTCATGCTTCAGTATTGGTCAGAATTCTTCTGCCACTGAAGGTGGTTTCAGGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGGATCATAAGTATCCTGGTTCATCAAATATCAACTTCCAGCAGCCATATTCATCTGTGTCACCTTGCTATGAAGAACCTGATCCAGAAGCCATAGCACAAATGAAGGAAATGATGTATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCCTGGAAGCACCCGAAAAGCCTAAAAGGAAGAATGTTAGGATATCTACTGATCCACAGACTGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTAGAAAATCTAGGTAACAAGCTTGACCCTATGAATTGTCCTCCTACTAGCATAGCCTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCATCCAAAACCCTAGCAGCCACATCCAATATTCCAAGGGTTGA 1344 0.4368 MDGLSWDNASSQLVANTPILWSTQLQDLEGDYHHSMPHLSSSVLNQTGYPYPSSEKVRGMVQSSTTSEIMSMMPNTNLPQRTETMPVKSVVAGASWEEALTSQSCQSLSVNVNQTSNYAADFNMAHQQQHLTNATQNGKATTCSLDESLDCLLSASNNSNTDTSVEDDGISMILSDCRNLWNNFSYGSTAANSSGESDQSNASNARNSDMRYPSVSELDESVSQSFSDQYLSQGRIIVDSEVNCRKRSSSTSCFSIGQNSSATEGGFRLISETSPKSKRPRWDHKYPGSSNINFQQPYSSVSPCYEEPDPEAIAQMKEMMYRAAAFRPVNLGLEAPEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDPMNCPPTSIAFSFNPSFPIQTHFPIQNPSSHIQYSKG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1389 447 Coils Coil 385 405 - -
Aed1g1389 447 MobiDBLite consensus disorder prediction 190 219 - -
Aed1g1389 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 411 IPR036638 GO:0046983
Aed1g1389 447 Gene3D - 351 413 IPR036638 GO:0046983
Aed1g1389 447 Pfam Helix-loop-helix DNA-binding domain 356 395 IPR011598 GO:0046983
Aed1g1389 447 PANTHER TRANSCRIPTION FACTOR BHLH87 1 444 - -
Aed1g1389 447 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 444 IPR045843 GO:0003700|GO:0006355
Aed1g1389 447 MobiDBLite consensus disorder prediction 190 211 - -
Aed1g1389 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Aed1g1389 447 SMART finulus 352 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1389 Aed-Chr1 12791846 12793189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1389 98 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.011 1.26e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g1389 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1389 - - gmx:100793830 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1389 1 12791846 12793189 Aed1g1389 1 12791846 12793189 ECH
Aed1g1389 1 12791846 12793189 Aed2g0257 2 1682261 1683547 PCT