Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1384 ATGGCGACAGTACCGGGACCGCTGATCTGGGAGATCGTGAAGAAGAACAACTCTTTCTTGGTGAAACAGTTCGGAAGGGGAACTCAGAGCGTGGAATTAAGCAGAGAGCCCAATAATCTCTACAACCTCAACACTTTCAAGTACTCCGGTTTGGCGAACAAGAAAACTGTCACCATTCAGGATGCTGGTAAGGATCAGTCTGTGTTGCTGGCAACAACCAAGTCAAAGAAACAAAACAAGCCAGCTGCATTGCTTCACAAATCTGTCATGAAAAAGGAGTTCAGCAGAATGGCAAAGGCAGTGCAAAATCAGGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGGTTGAGCGTTGTCAATAGGAGCCTCAGAGTTGCAAAGTCTGGTGTGAAGAAGAGGAACAGACAGGGTGTGAAGGTCCCTAGCAGGAAGTGA 453 0.4724 MATVPGPLIWEIVKKNNSFLVKQFGRGTQSVELSREPNNLYNLNTFKYSGLANKKTVTIQDAGKDQSVLLATTKSKKQNKPAALLHKSVMKKEFSRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLRVAKSGVKKRNRQGVKVPSRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1384 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Aed1g1384 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
Aed1g1384 150 Gene3D - 7 133 - -
Aed1g1384 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1384 Aed-Chr1 12767060 12769031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1384 1 142 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.535 4.43e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1384 K02903 - gmx:100500189 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0267 2 1729236 1731861 Aed1g1384 1 12767060 12769031 ECH
Aed1g1384 1 12767060 12769031 Aed1g1384 1 12767060 12769031 ECH
Aed1g1384 1 12767060 12769031 Aed2g0267 2 1729236 1731861 PCT