Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1376 ATGGTTCGACCTTCATCAATTTTTATTGAGATTGTTGGTGTAATGAGTCGAGAGCAACAGAAGCGAGGGAAGCAAGAAAAAGGTTCTGATGGAGCTGAAAAGGTTATTGTTGCCGTTAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTAACTCATGTTGTGCAACCTGGCGATTGCATTACACTGCTAGTGGTTGTACCTTCTCAAAGTTCAGGCCGAAGATTATGGGGTTTTCCAAGGTTTGCTGGCGACTGTGCCAATAGTCAAAAGAAGACTACTTCAGGATCAAGTTCAGAACAGAAGAGTGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAACAAGATAAATGTGAAGATTAAAATTATTTCTGGATCACCCTGCGGAGCAGTGGCTGCGGAAGCCAAGAAAACCCAAGCCAATTGGGTCGTTTTAGACAAACAGCTCAAACATGAGGAAAAACAATGCATGGAAGAGCTGCAGTGCAACATTGTGGTTATGAAGCGTTCCCAACCTAAGGTACTCCGCTTGAATTTGGTTGGATCACAGAAGAAAGATCTTGAAGAATTAAGTCATTTACCTTCTGAACAAGATGATATGCCTGGAAAACAGACTAAGAAGAAGAATGTCTCTTTAAATTCCATAAAAGGACCAGTTGTCACTCCAACCAGCAGCCCTGAGCTAGGGACACCATTTACTGCAACTGAAGCTGGTACTTCGTCGGTTTCAAGCTCCGATCAAGGAACTTCACCATTTTTTGTCTCTGAGATGAATGGTGAGTCAAAGAAAGAGGAAACTATCAAAGAAAATCCAGAACTTGACGATTCTATATCAGACACAGACAGTGAAAGTTTGTCCACATCTTCAGCAAGCTTGAGATTCCAGCCATGGATCACCGATTTACTTTTGCATCAACAATCATCTCAACCTACGGAAGAAAGAACAGAGAGATCTCATAATAAGCTTCAATCATCTACCACTAGAGCTTTGCTAGAAAAGTTCTCAAGACTTGATAGAGAAGCTGAAATTGAAATCTCAACCTATAAGACTGACTACAATTTCAGTGGAAATGTAAGAGAAGCAATAGCATTATCTAGAAATGCCCCTCCTGGTCCACCTCCCTTATGTTCAATCTGTCAACACAAGGCTCCTGTTTTTGGAAAACCTCCCAGATGGTTCAGCTATTCTGAATTGGAGCTTGCCACAGGTGGATTTTCAAAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGGCTTCTGCCAGATGGACAAGTCATTGCTGTTAAGCAACATAAATTGGCAAGTTCTCAGGGTGATCTTGAATTCTGCTCAGAGGTAGAAGTCCTGAGCTGTGCTCAACACCGAAATGTTGTTATGCTGATTGGGTTCTGTATAGAGGATAAAAGAAGGCTATTGGTTTATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGGGAGACAGCAAGAACCATTAGAATGGTCTGCCCGGCAAAAAATTGCTGTTGGAGCTGCTCGAGGGTTGCGATATCTACATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGCGACCAAACAACATTCTTATCACTCATGATTTTGAACCCCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGAGTGGAAACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCGGAATATGCTCAAAGTGGCCAAATAACTGAAAAGGCTGATGTTTATTCGTTTGGTGTGGTATTGGTGGAACTTGTTACAGGAAGAAAGGCCGTGGATCTCAAACGGCCAAAGGGGCAACAGTGTCTTACTGAGTGGGCACGGCCACTGTTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTGGGAAATCACTATTCAGAACATGAGGTCTATTGCATGCTACATGCTGCCTCATTATGCATTAGGCGAGACCCTTATTCTAGACCACGCATGTCACAAGTTCTGCGAACACTGGAGGGTGACACGGTCATGGACCCAAATTACATTTCAACTCCCAGTTATGATGTGAGAAACCAGAGTGGTTGA 2133 0.429 MVRPSSIFIEIVGVMSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCANSQKKTTSGSSSEQKSDITDSCSQMILQLHDVYDPNKINVKIKIISGSPCGAVAAEAKKTQANWVVLDKQLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGSQKKDLEELSHLPSEQDDMPGKQTKKKNVSLNSIKGPVVTPTSSPELGTPFTATEAGTSSVSSSDQGTSPFFVSEMNGESKKEETIKENPELDDSISDTDSESLSTSSASLRFQPWITDLLLHQQSSQPTEERTERSHNKLQSSTTRALLEKFSRLDREAEIEISTYKTDYNFSGNVREAIALSRNAPPGPPPLCSICQHKAPVFGKPPRWFSYSELELATGGFSKANFLAEGGFGSVHRGLLPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLKRPKGQQCLTEWARPLLEEYAIEELIDPRLGNHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVLRTLEGDTVMDPNYISTPSYDVRNQSG 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1376 710 PANTHER OS01G0253100 PROTEIN 30 708 IPR045271 GO:0004714|GO:0006468
Aed1g1376 710 CDD USP_Like 34 157 - -
Aed1g1376 710 Gene3D Phosphorylase Kinase; domain 1 389 492 - -
Aed1g1376 710 ProSitePatterns Tyrosine protein kinases specific active-site signature. 538 550 IPR008266 GO:0004672|GO:0006468
Aed1g1376 710 MobiDBLite consensus disorder prediction 318 337 - -
Aed1g1376 710 ProSiteProfiles Protein kinase domain profile. 417 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1376 710 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 30 708 - -
Aed1g1376 710 Pfam Protein tyrosine and serine/threonine kinase 421 687 IPR001245 GO:0004672|GO:0006468
Aed1g1376 710 SUPERFAMILY Protein kinase-like (PK-like) 401 698 IPR011009 -
Aed1g1376 710 CDD STKc_IRAK 423 689 - -
Aed1g1376 710 MobiDBLite consensus disorder prediction 200 217 - -
Aed1g1376 710 Gene3D Transferase(Phosphotransferase) domain 1 493 697 - -
Aed1g1376 710 MobiDBLite consensus disorder prediction 218 268 - -
Aed1g1376 710 MobiDBLite consensus disorder prediction 270 287 - -
Aed1g1376 710 MobiDBLite consensus disorder prediction 200 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1376 Aed-Chr1 12726141 12732198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1376 397 690 Trihelix Transcription Factor Family AT1G70460 53.821 5.60e-102 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Aed1g1376 PK_Tyr_Ser-Thr 7.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1376 - - gmx:100789216 1307.74