Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1375 ATGGAACTCCCCGAAGCGGACCCTGCCACAATCACAAGATACAAATGCTCGGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACCTCGTATCATTCTGTTCATCAGCCAAGATGTGGTGTATGTCGAAAGCACTGCAAATCCTTTGAGTCTCTCAGGGAACATCTCACCGGTCCTTTGCCGCGGGGAATTTGTTCAGCCATGTTCTCTCAACAGGGCTGTCAACTTTGCCTGGCACTATTTGATAGTCCCGGGTCTCTCATTGGTCATAGAGAAACATGTCACTTATCTTCCCCTACTCGTCCAGAAACAAGTGCATTGCCCTATATAGATTCCCAATTTGATTCTCAAGATTCTTCTGATGAAAACCATGCTGGCGAGGGCCCTGGAGGAGCAGTTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAAATTAATCTTCCATACATATGACATTACTGGATTGAAAGAAGAGCATCTCAGAAATGCCATGCCACTGAAGGAAGTTCGAGAAAAGGTACTGCAAATTCTATACAATGGAGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCACGACTTAGCACACGATTTAGATTGCTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTACCATCCATTGATGAAAACAAACTTGGTCAGCCATTCGCTCAATTATGATATTCAATCTGGCACTCATGACCCGTATGAAGATAGTATTTCTGTCATGAGACTATACAAGAGACTACGATCTCAAATTCATCCGGAGGAGGGCCATGGAACATTGACTCTGAGTAACAACATTATTGGCATGCCAGATAGCTGGATATCCAGGGAACTTGACAACCTCACACCAGATGAACTTTATGCCATGTCAAGATCAGATTATAAGTGTTGGTGCTTGGATTTGAGGCCAAGATTGTCATCCTGA 1038 0.4345 MELPEADPATITRYKCSACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCRKHCKSFESLREHLTGPLPRGICSAMFSQQGCQLCLALFDSPGSLIGHRETCHLSSPTRPETSALPYIDSQFDSQDSSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDEKLIFHTYDITGLKEEHLRNAMPLKEVREKVLQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYHPLMKTNLVSHSLNYDIQSGTHDPYEDSISVMRLYKRLRSQIHPEEGHGTLTLSNNIIGMPDSWISRELDNLTPDELYAMSRSDYKCWCLDLRPRLSS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1375 345 ProSitePatterns Zinc finger C2H2 type domain signature. 16 38 IPR013087 -
Aed1g1375 345 SUPERFAMILY Ribonuclease H-like 139 287 IPR012337 -
Aed1g1375 345 PANTHER EXONUCLEASE FAMILY PROTEIN 11 341 - -
Aed1g1375 345 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 341 - -
Aed1g1375 345 SMART exoiiiendus 137 291 IPR013520 -
Aed1g1375 345 Gene3D Classic Zinc Finger 5 64 - -
Aed1g1375 345 SMART c2h2final6 14 38 IPR013087 -
Aed1g1375 345 SMART c2h2final6 78 101 IPR013087 -
Aed1g1375 345 SMART c2h2final6 43 63 IPR013087 -
Aed1g1375 345 Gene3D - 136 295 IPR036397 GO:0003676
Aed1g1375 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 43 IPR013087 -
Aed1g1375 345 ProSitePatterns Zinc finger C2H2 type domain signature. 80 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1375 Aed-Chr1 12722078 12725307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1375 13 338 C2H2 Transcription Factor Family AT3G27970 47.977 1.91e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1375 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1375 K18327 - gmx:100788682 629.402