Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1373 ATGGAGGAAAAGCCTAAGCTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTCGTTTCCCTTCAATTGTGTATGTACAAATGGAAAGCCTGCTTATGTGACCATCAACATAGACAACAATAAGGTGGCGAAAACGAGCCAAGAAAGTGAACGTGTGTGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCACAAGACTCGACTATCACAATTACACTGAAAACATCATGCTCCATTTTGGGGAAATTTCACATGCAGACCAAGCGGTTTAAGGAACACAGTTTCATCAATGGTTTCTTCCCTCTCCTCATGGAAAATGGAAAATCAAATCCACAACTAAAATTAAGACTCATGTTATGGTTCAAGCCAGCAGATATGGAACCAAGTTGGTCAAAGATACTAAGCAATGGGGAATTTCAAGGACTGAGAGATGCTACATTCCCACAAAGGTCTAATTGCCAAGTTAAGCTCTATCATGATGCTCACCATTCCTCTACTTTCCACCCTCCTTTTGATCTGTGTGGAGCACCAAGACATCTGTGGGAAGATGTCTATAAGGCCATTGAGGAAATCCCACATGCCAGGGAGATAAAGCTGGGTGAGCTATTAAAGAAGAAGGCAGATGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCTTTTCCTTTTATTAAGAACAAAGGTACAAATATAGCAGGAGCAAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGATGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAATGTGATGCTTCTCTTCTAGTCCCAGCCAACACTTTAGAAAATCTCATTCCCACTTTCTCAAGCCCTCCCAAAGAGAGGAATTGGAAAGTTCAAGTGTACAGGTCAATAGACCAGGTGTCTGCTAGCCAGTTGTTTAGAAAGCTAACTGTGGAGAGAAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTGTGTACATTGAAAACCAATATTTTATTGGAGGGTGCCATTTGTGGCAGAAAGATAGGCATAGTGGATGCAGGAATCTGATTCCTGTGGAGATTGCTCTCAAGGTGGTGAGTAAGATTAAAGCAAGAGAGAGGTTTGGTGTGTACATAGTCATGCCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCGGTTCAAGATATACTTCACTGGACCAGAGAAACAATGACAATGATGTATAACTTGATTGGAGAAGCAATAACAGAAAGTGGGGAGCCAGGGCATCCAAGAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAATGAAGGGAAAAGATGAGTATCTTCCACCGCATTCTCCCCATCCTGAAACACAATACTGGAATGCACAACAAAATAGGAGGTTCCCGGTTTATGTTCACTCCAAGATCATGATAGGTATGATTATCACTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGTCATGTATTCAGAGAATGCGGTCAATAGGGGATCACATGTGGGGAATCTACAGCAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTAAGTTACCCTGTCAAAGTAACACAAGAAGGCTCTGTTGTGGATCCGGTTGATGCTGGAGATCATTTTCCTGATACAATATCTCCAGTGAAGGGGAAAAGATCTAAATTCTTAGCCCCTATCTTTACTACTTAA 1758 0.4249 MEEKPKLLIHGTIEATIFNATPYSPSFPFNCVCTNGKPAYVTINIDNNKVAKTSQESERVWNQTFQIQCAHPQDSTITITLKTSCSILGKFHMQTKRFKEHSFINGFFPLLMENGKSNPQLKLRLMLWFKPADMEPSWSKILSNGEFQGLRDATFPQRSNCQVKLYHDAHHSSTFHPPFDLCGAPRHLWEDVYKAIEEIPHAREIKLGELLKKKADEGVAVRVMIWDDETSFPFIKNKGTNIAGASLNKGGPREPWHDAHACVTGDAAWDVLTNFEQRWTKQCDASLLVPANTLENLIPTFSSPPKERNWKVQVYRSIDQVSASQLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDRHSGCRNLIPVEIALKVVSKIKARERFGVYIVMPMWPEGVPESEPVQDILHWTRETMTMMYNLIGEAITESGEPGHPRDYLNFFCLANREMKGKDEYLPPHSPHPETQYWNAQQNRRFPVYVHSKIMIGMIITEELFLEPESLSCIQRMRSIGDHMWGIYSSEEIVDMEGVHLVSYPVKVTQEGSVVDPVDAGDHFPDTISPVKGKRSKFLAPIFTT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1373 585 Gene3D Endonuclease Chain A 238 298 - -
Aed1g1373 585 PANTHER PHOSPHOLIPASE D 197 239 IPR015679 -
Aed1g1373 585 PANTHER PHOSPHOLIPASE D ALPHA 502 585 - -
Aed1g1373 585 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 142 IPR035892 -
Aed1g1373 585 SUPERFAMILY Phospholipase D/nuclease 157 316 - -
Aed1g1373 585 Pfam C2 domain 39 110 IPR000008 -
Aed1g1373 585 PANTHER PHOSPHOLIPASE D ALPHA 197 239 - -
Aed1g1373 585 PANTHER PHOSPHOLIPASE D ALPHA 240 496 - -
Aed1g1373 585 Pfam Phospholipase D C terminal 502 574 IPR024632 -
Aed1g1373 585 Gene3D Endonuclease Chain A 299 496 - -
Aed1g1373 585 PANTHER PHOSPHOLIPASE D ALPHA 5 197 - -
Aed1g1373 585 SUPERFAMILY Phospholipase D/nuclease 305 496 - -
Aed1g1373 585 PANTHER PHOSPHOLIPASE D 240 496 IPR015679 -
Aed1g1373 585 PANTHER PHOSPHOLIPASE D 5 197 IPR015679 -
Aed1g1373 585 PANTHER PHOSPHOLIPASE D 502 585 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1373 Aed-Chr1 12705082 12707723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1373 240 585 Phospholipase D Gene Family (Wang group) AT1G55180 52.217 1.67e-137 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1373 K01115 - gmx:100807431 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1373 1 12705082 12707723 Aed1g1373 1 12705082 12707723 ECH
Aed1g1373 1 12705082 12707723 Aed2g0294 2 1906899 1910141 PCT