Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1355 ATGGATTATTATGTTTCTCAACACTCGCAATTGGAATCTGAGGCTGATGCCTACAATGTTAATGATAATGGTGATGCTGATGCTGATGCCGATGATGAGCACGTAAAGCCCTCCTTCAATCGTCGCGATTCCTTTTCAGGGAAACTCTTCGTTGGAGGCATTTCTTGGGAAACTTCTCAAGAGTCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCAGTGATAATGACAAATAAACTTTCTGGAAGGCCACGGGGGTTTGGCTTTGTAACATTTTCCGATTCAGCCGTTGCAGATGAAGTTTTGGCACAGGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCAAGGGAGAACATGGATGTTACTGGTGTATTCAAAACAAAGAAGATATTTGTTGGGGGAATACCCCAGTTTTTCGCTGATGATGAGTTGAGGGAACACTTTTCACCTTATGGCAATGTTATGGAGTGCCAAATCATGCTGGATCACAGTACTGGGCGTTCTAGAGGCTTTGGATTTGTCGCTTTTGACAATGAAGATTCAGTTGACAATGTTTTTTCAGCAGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATTACTGCAACACCTCACGGAAGTCATATGGTGGATTTGGCCATGGAATGGATGGATATGGAGGGAATGGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGATTCTGGAATGAACGGAGCATATGGTCAATTTGATGGGAGCTTTGGAGGAAGTGCTGCCACTGTTTATGGTGGCTATTGTGGATATGGCTATGGATTTGGATATGGTGGGCCAATGTATTGCTTTGGTGGTTATGGACTCAATTCTTATGCTAATCCTGGAGGTTATGGTGGCGGTGGCAGCATTACTTCCTATGGAGATGGTAATGCATATGGAAGAACTGGTAGTTTCAACCCCACTGGTGGCTATAACAGCGGCAGAGTGGCTGAGAAGGATGATGGTCCTACATCTGGAAGGTACCATCCTTACTGGAAGTGA 1089 0.4334 MDYYVSQHSQLESEADAYNVNDNGDADADADDEHVKPSFNRRDSFSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFSDSAVADEVLAQEHTIDGRVVEVKRTVPRENMDVTGVFKTKKIFVGGIPQFFADDELREHFSPYGNVMECQIMLDHSTGRSRGFGFVAFDNEDSVDNVFSAGKIHEIGGKQVEIKRAEPKRSGVDYCNTSRKSYGGFGHGMDGYGGNGSRNRNHGKRGGQYTDSGMNGAYGQFDGSFGGSAATVYGGYCGYGYGFGYGGPMYCFGGYGLNSYANPGGYGGGGSITSYGDGNAYGRTGSFNPTGGYNSGRVAEKDDGPTSGRYHPYWK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1355 362 MobiDBLite consensus disorder prediction 338 362 - -
Aed1g1355 362 PANTHER BOULE-RELATED 39 360 IPR037366 GO:0003729
Aed1g1355 362 SUPERFAMILY RNA-binding domain, RBD 47 216 IPR035979 GO:0003676
Aed1g1355 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 123 IPR000504 GO:0003723
Aed1g1355 362 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 39 360 - -
Aed1g1355 362 Gene3D - 132 269 IPR012677 -
Aed1g1355 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 206 IPR000504 GO:0003723
Aed1g1355 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 116 IPR000504 GO:0003723
Aed1g1355 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Aed1g1355 362 SMART rrm1_1 137 210 IPR000504 GO:0003723
Aed1g1355 362 SMART rrm1_1 48 119 IPR000504 GO:0003723
Aed1g1355 362 Gene3D - 46 128 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1355 Aed-Chr1 12573114 12576965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1355 28 211 Eukaryotic Initiation Factors Gene Family AT1G71770 23.188 1.96e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1355 K12741 - gmx:100818080 586.645