Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1348 ATGGACCACCACAAAGAGAGAATAAAGAGTGGGTGCCAAAAGATTTTGGATGGAATAAATTCAATGTCTTTGGTAAATTTAGATGACCAGCAAGTCCATTCCTTAGTGATGATGAGAGAAATAGCACGTGGAGTTGTTGACGATCGAGATAGAAAGGTCTGTGCATCCAGAGATATCATTCAAATATTAAGCAGGACGTCCTTCGAAGGCTTGGATGACCAGAGGATGCATCTAGTCATGAGGATGAAAGAAATTGCACATGGGGTTATTGATAAACAACCTAGAGTTGCAATAACTAGGCCTGACTTGCTTGCAGAACAAGTTGCCTTTGTGGATGAAAGGATGAGAGATAGTCCCATGGTTGAGTCAACCAAGATCTGCAATGGAGATGCCCTGATCGATGGGGCACAAAGCATGACTAATGAAGATGGGATGTTGGACGTGGAACATGTTTTAAGATTTGAAAATGGGATAGACGAAGTGCAGGAGTCTTTGTTGCCTTGCTTTCAGCAATTTCTTATGTGGCCCCCTAGTGATTGCATCACCTTAGAGTGGGTTCAGGATATGATGGTCATCCTTGAGCAGGCTTCACAGAAGATGTTGCCATCTGAATTCTGTCACGCTGTGCCAACCATTTTGGTGGACAAATTGGGAGATGCTGCTTGTAGTATTTTATGTATTGAACCAAACTGTGTGGAGATTAATTGTCTAGGAGAAGATTCACAAGTAATTGTAGTAGGCGATATACATGGGCAGTTTCATGATTTAATGTTTCTCTTCAAGCAGGCAGGAGTTCCTTCTGAGAATCAAATTTATGTTTTTAGTGGAAATTATGTAGATAAAGGAGCTTGGGGAATTGAAGTATTTTTGGTCTTGCTGGCTTGGAAGGTCTTGATGCCTCACAGAGTATATCTACTTCGTGGAAATCATGAATCAAGATATTGCACTGCAAGATATGGTTTTAAGAAGGAGGTGTGGGCCAAATATGGTGATCAAGGTGAAGATGTCTACAATAAATTCCTAGCATGTTTCAAGGAGCTTCCATTAGCTTCAGTTATTGCCAACCGTGTTTATACTACTCATGGAGGACTTTTTCGTAGTATACAAGCAGCCCCTTCACTGAAACTGAAACGGAATAAAACACACAGGGTGGATCTTGGCTCTTTAGCTGAGTTATCTGAAGTTAAAAGATCTTTTGTAGACTGCCCTTATGAAGGTCCTAATATATTATTGAGTGATGTTCTCTGGTCTAGACCATCTAATAGGGATGGTCTGAGGGATAATACAGGTCAAAAGTTAGGTTTATGGTGGGGTCCTGATTGCACCGAGGCATTCTTAAAACAGCACAATTTAAAGCTGATTATCAGATCACATGAAGGACCAGATGCAAGGGCTGGTAGAGATGATGATTTTGGGGATATGCTGAGTGGATACAGCATAGATCATGATGGAGAATCAGGAAAACTATATACCCTTTTTAGTGCACCAGACTATCCACAGTCGCCTGATTTTGCCACTCCTTCCTTTCACTCATTCAAAGCGGCAGAAAGACCAATGGTGGATCCTTATGTTGATTTTGATTTTGATACCAATAATACGGAATCGAGTAAACTAGACTCTTCTCAAAGTGCCTCAACCTCTACCCTTTCTGCTCCTCAAAGATTCTATCCAGATGGAATGAGACCTGAGTTTGACTTTGGGGTATTAGGCATATATAATGCCCCATGTTGGAATGTAGAACTTCCTGATGGTTCAGGTGGTACTCAAGTTGTGGAGGTTCCAAGGGCACCATTGGTGGAAGGGTTGCCTCTGCCACCAAACATACAGGAGCCACACAATGCTGCTTATGGGTATTTATTTGAGCTAGTTGCTGGCCTGAAACATATGATTGTAACAAGGGAGACTGAGAACAGGGCCCGTGTGTCTGCTTTGAGAAGTAGAGCCAGGAAACGAAAGGGTAAGGGTAACTCATAG 1974 0.42 MDHHKERIKSGCQKILDGINSMSLVNLDDQQVHSLVMMREIARGVVDDRDRKVCASRDIIQILSRTSFEGLDDQRMHLVMRMKEIAHGVIDKQPRVAITRPDLLAEQVAFVDERMRDSPMVESTKICNGDALIDGAQSMTNEDGMLDVEHVLRFENGIDEVQESLLPCFQQFLMWPPSDCITLEWVQDMMVILEQASQKMLPSEFCHAVPTILVDKLGDAACSILCIEPNCVEINCLGEDSQVIVVGDIHGQFHDLMFLFKQAGVPSENQIYVFSGNYVDKGAWGIEVFLVLLAWKVLMPHRVYLLRGNHESRYCTARYGFKKEVWAKYGDQGEDVYNKFLACFKELPLASVIANRVYTTHGGLFRSIQAAPSLKLKRNKTHRVDLGSLAELSEVKRSFVDCPYEGPNILLSDVLWSRPSNRDGLRDNTGQKLGLWWGPDCTEAFLKQHNLKLIIRSHEGPDARAGRDDDFGDMLSGYSIDHDGESGKLYTLFSAPDYPQSPDFATPSFHSFKAAERPMVDPYVDFDFDTNNTESSKLDSSQSASTSTLSAPQRFYPDGMRPEFDFGVLGIYNAPCWNVELPDGSGGTQVVEVPRAPLVEGLPLPPNIQEPHNAAYGYLFELVAGLKHMIVTRETENRARVSALRSRARKRKGKGNS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1348 657 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 4 58 - -
Aed1g1348 657 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 114 646 - -
Aed1g1348 657 SMART pp2a_7 209 516 IPR006186 GO:0016787
Aed1g1348 657 MobiDBLite consensus disorder prediction 534 554 - -
Aed1g1348 657 Gene3D - 179 551 IPR029052 -
Aed1g1348 657 MobiDBLite consensus disorder prediction 534 553 - -
Aed1g1348 657 PRINTS Serine/threonine phosphatase family signature 342 368 IPR006186 GO:0016787
Aed1g1348 657 PRINTS Serine/threonine phosphatase family signature 305 329 IPR006186 GO:0016787
Aed1g1348 657 PRINTS Serine/threonine phosphatase family signature 242 269 IPR006186 GO:0016787
Aed1g1348 657 PRINTS Serine/threonine phosphatase family signature 272 299 IPR006186 GO:0016787
Aed1g1348 657 PRINTS Serine/threonine phosphatase family signature 488 504 IPR006186 GO:0016787
Aed1g1348 657 Pfam Calcineurin-like phosphoesterase 243 461 IPR004843 GO:0016787
Aed1g1348 657 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 114 646 - -
Aed1g1348 657 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 4 58 - -
Aed1g1348 657 SUPERFAMILY Metallo-dependent phosphatases 204 521 IPR029052 -
Aed1g1348 657 ProSitePatterns Serine/threonine specific protein phosphatases signature. 306 311 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1348 Aed-Chr1 12536923 12543429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1348 173 453 Calmodulin-binding Proteins AT5G63870 52.234 2.64e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1348 K04460 - gmx:100779241 948.347