Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1347 ATGGCACGGGGGAGGATCAGGACAAGGCTCCGTAGGAGCCATCTTTACACATTTGGTGGTTGCCTCAGGCCAACTACCACTGAGGAGGTGCCTCATCCACTTCAAGGTCCCGGCTACTCGCGAACCGTGTACTGCAACCAGCCTCAACTACATGAAAAAAAATCTCTATTTTACTGCAAGAATGATGTATCAACCACCAAATATAATGTCATCACTTTTGTGCCCAAGGCATTGTTTGAACAATTTCGAAGGGTTGCTAATATATACTTCCTTTTAGCTGCTTGCCTTTCGGCGTCTCCAATTTCACCTTTCAGCCCACTAAGCATGATTGCTCCCTTGGCGTTTGTTGTGGGGCTTAGTATGGCAAAGGAGGCATTGGAGAATTCGCGCAGGTTCCTTCAGGATGTCAAAGTTAATCGCCGGAAAGCTAGTCTCCATAAAGGCAATGGAGTTTTTGGTCTCAGTTCGTGGCAGACAATAATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTCCCAGCTGACTTGCTTCTCTTGGCCTCAAGTTATGAGGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGGCCACCTTGTCTCTGGATAATGATGAGGCTTTTAAGGATTTCTCTGGAACAATACATTGTGAGGATCCCAATCCTAATCTTTACACTTTTGTTGGGAACTTTGAGTATGAACATCAGGTTTATCCTCTTGATCCTGGTCACATTCTCCTCCGAGATTCAAAACTTAGGAACACTGATCATGTCTATGGAGTGGTCATTTTCTCTGGACATGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATAGAGAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATTGATATCTTTCATTAGTTCAATAGGATTTGTTGCAAAGACCAAATACCAAACGCCAAAGTGGTGGTATTTACGGCCTGACAAGATTGAATACCAGTTTGATCCTGGGAAAATTGGATTGGCTGGGATGAGTCATCTGATTACTGCACTCATTCTTTATGGATATTTGATACCCATCTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTATTACAGGCAACCTTCATTAACCAAGACATTCAAATGTACGATGATGAATCTGGGACTCCTGCTGAAGCGCGGACATCCAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTGTCTGATAAAACTGGCACTTTAACCTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTTCGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTACTGATCTTGAAGAGCAGGAATTGGATCTCTCTAATTTCCCCATGCGTACCAAGAGTAAAGCGGCATGGGAAACTGAACTGGAGACTGTTGTTGTTTCCAAGGGTGAAGAAGATCAAAGGCCTGCCATTAAGGGATTTGGTTTTGAAGATGATCGCCTTATGAATTGTAATTGGTCGAATGAACCCAATGCTGATGTCCTTTTGCTGTTTTTCCGGATATTAGCAGTTTGCCATACAGCCATTCCTGAACTGAATGAGGAGACTGAGAGTTGTACATATGAAGCTGAATCACCAGATGAAGGGGCTTTTCTAGTAGCAGCAAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTTGTCATTCGTGAAAGATTTTCTGCTTCAGGACAAGTGATTCAAAGAGAATATAAAATTTTGAATCTGCTGGACTTTACTAGCAAAAGAAAGCGCATGTCAGTCATTGTGCGTGATGAGGAGGGAAAAACCATTCTTTTCTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAACTATATTTGGAGGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACGCTAGCCCTGGCTTACAGAAAGCTTGATGACCAAGAGTACTCTGATTGGAATAACGAGTTTCAGAAGGCCAAGACAGCTGTTGGGTCTGACAGAGACGCAATGCTTGAGCAGGTTTCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGGGCCACTGCTGTGGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGGTCTGTCTACTGCAAATTATTTAACCACATAACACCATTTCATTTCTGTTTCAAGTTACTCAAAAGTGCCTCTGCAATAGAGTTTGCTGAAACTTTTGTTTCTGTGGGTATGAAGCAAATCTGTATCTCAGTGAATTCAGATTCAGTAACTAATGATGGGAAAGAGGTCATCAAAGGCAACATCTTGAATCAAATCACCAATGCCTCACAAATGTTAAAGTTGGAAAAGGATCCACATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGATGTCAAGCACCAATTTTTGGGATTGGCTGTTGGTTGTGCATCTGTTATTTGCTGTCGTGTGTCTCCAAAGCAAAAAGCATTGCATGTAACATTTGTGGAACTCAAGCTTGCAAATTCTTTTCAGGCAGTAATGGCTAGTGACTTTTCTATTGCTCAATTCCGATTTTTGGAGCGACTTATGGTAGTCCATGGACACTGGTGCTACAAGAGAATTGCACAAATGTACTACAAAAAGGACATTGAAGATCAACACATGTGGACCAGGGAGCGCTCTAAAGCAAGGCAGGTAACTAAGATTGGATTCACAGCAAGAGTGGAAGCAAAGATTAGGCAGTTTAAAAGCAAGCTGCAGAAGAAGCAGCAGTCTTCACTGGGGGCTTTGTCCCCATCATGA 2964 0.417 MARGRIRTRLRRSHLYTFGGCLRPTTTEEVPHPLQGPGYSRTVYCNQPQLHEKKSLFYCKNDVSTTKYNVITFVPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALENSRRFLQDVKVNRRKASLHKGNGVFGLSSWQTIMVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDEAFKDFSGTIHCEDPNPNLYTFVGNFEYEHQVYPLDPGHILLRDSKLRNTDHVYGVVIFSGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQTPKWWYLRPDKIEYQFDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDDESGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMATDLEEQELDLSNFPMRTKSKAAWETELETVVVSKGEEDQRPAIKGFGFEDDRLMNCNWSNEPNADVLLLFFRILAVCHTAIPELNEETESCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFSASGQVIQREYKILNLLDFTSKRKRMSVIVRDEEGKTILFCKGADSIIFDRLSKNGKLYLEATTRHLNEYGEAGLRTLALAYRKLDDQEYSDWNNEFQKAKTAVGSDRDAMLEQVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGSVYCKLFNHITPFHFCFKLLKSASAIEFAETFVSVGMKQICISVNSDSVTNDGKEVIKGNILNQITNASQMLKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLAVGCASVICCRVSPKQKALHVTFVELKLANSFQAVMASDFSIAQFRFLERLMVVHGHWCYKRIAQMYYKKDIEDQHMWTRERSKARQVTKIGFTARVEAKIRQFKSKLQKKQQSSLGALSPS 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1347 987 Gene3D - 420 432 IPR023214 -
Aed1g1347 987 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 766 - -
Aed1g1347 987 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 932 978 - -
Aed1g1347 987 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 780 889 - -
Aed1g1347 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 931 IPR023298 -
Aed1g1347 987 Pfam Cation transport ATPase (P-type) 539 644 - -
Aed1g1347 987 CDD P-type_ATPase_APLT_Dnf-like 61 934 - -
Aed1g1347 987 Pfam Phospholipid-translocating P-type ATPase C-terminal 900 932 IPR032630 -
Aed1g1347 987 SUPERFAMILY Calcium ATPase, transduction domain A 149 287 IPR008250 -
Aed1g1347 987 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Aed1g1347 987 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 516 680 IPR023299 GO:0000166
Aed1g1347 987 Gene3D - 433 461 IPR023299 GO:0000166
Aed1g1347 987 Gene3D - 113 289 - -
Aed1g1347 987 Gene3D - 713 905 IPR023214 -
Aed1g1347 987 Coils Coil 449 469 - -
Aed1g1347 987 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 766 - -
Aed1g1347 987 Gene3D - 584 691 IPR023299 GO:0000166
Aed1g1347 987 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 895 931 - -
Aed1g1347 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Aed1g1347 987 SUPERFAMILY HAD-like 411 888 IPR036412 -
Aed1g1347 987 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 58 891 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Aed1g1347 987 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 895 931 - -
Aed1g1347 987 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 780 889 - -
Aed1g1347 987 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 932 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1347 Aed-Chr1 12525934 12531163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1347 932 979 Primary Pumps ATPases AT1G17500 70.833 3.13e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1347 K01530 - gmx:100778710 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1347 1 12525934 12531163 Aed2g0331 2 2186972 2194667 PCT