Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1345 ATGCGGCCAGAAGTGCCAAAAGGTGTGCGTAAGGCTGATTCGTCCTTTGTGCCTCAGTTTCAAAACTCCAAAGGGTGTTTGGCAGTATCTACTGCAGCTTATCCTCTGAAAAAGTCAAAACCAAGCATTCTCAAGTGGAGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAAGTATTGTCCTGTCTTACACTCTTACTGAATTTCTATCTTTCTGATCTCTTTGTTTACTATGCAGTATCTGACTATCTGTATTACATTACTGATTTTGTTTTAAATGGGACAATCTCAAACTGTTTGCAGATAAATCGAGTTGAATTTATTCATTCCAAATCATTTTTACACAGGGACATCAAGCCAGACAACTTCCTAATCGGTTTGGGGAGGCATTCAAATGAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAGATACAGAGACAGCTCTACCCATCAACATATTTCTTACAGAGAAAATAAGAATTTTACTGGAACTGCCAGATACGCTAGTATGAATACTCATCATGGAATTGGTATTCTCTCAATGTATCTTTTCATTAAACTCCATTGCCATGAGCAAAGCCATAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGGCTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGGGAGAAGAAAGTTTCTACTACTATTGAGGTGAGAAAAATTGTTCTTTGTGTCGTGGCTACCCCTCAGAGTTTGCTCCATACTTCCATTACTGTCTGTGGGTCACTGGGATTTGATGACAACCCAGATTATGCTCGTTTGAAAAGGCTGTTCCATGACCTTTTCATTCGTGAAGGATTCCAGGGTTATGTCTTTCATTGGAACATTTTGAAATATCAGCAATCTCAAATTGCCACACCTTCTGCTCATGCTATTGGTCCTGCTGCTGGACCAAGTTCTGGGGTGCCACCAGCTGTTGTAAATGCTGATAGACAGCAAGGCATACTGGTTGGTCTTCATCTGATCCTTCTCAAAGAAGAAACTCTGGACCTATTGGCAAATGATGGAATGTTATCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGGATGAGTGTTTATTATTTTGGAAGAAAAACAATGAACATGATTTCCCATTTATCCAAAATTTGGAGGCAGTTGAAGATGATGATGATATGTTGTTTTCTTTGATGAAAGTCAGTAGGGTAGCGACTGATGCAACTTTCTTCACAGAGCAGAATTGCATGAAGCTTTTGGTTTCACGCGTGGAAGTGTTAAAATTAACATTGAAAATGGAGCAAAGAAAAAGAGTATCCGTGACTGTAACTAATTAG 1389 0.3924 MRPEVPKGVRKADSSFVPQFQNSKGCLAVSTAAYPLKKSKPSILKWSTNQSCIKYCKEEVLSCLTLLLNFYLSDLFVYYAVSDYLYYITDFVLNGTISNCLQINRVEFIHSKSFLHRDIKPDNFLIGLGRHSNEVYAIDFGLAKRYRDSSTHQHISYRENKNFTGTARYASMNTHHGIGILSMYLFIKLHCHEQSHRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYEKIREKKVSTTIEVRKIVLCVVATPQSLLHTSITVCGSLGFDDNPDYARLKRLFHDLFIREGFQGYVFHWNILKYQQSQIATPSAHAIGPAAGPSSGVPPAVVNADRQQGILVGLHLILLKEETLDLLANDGMLSRQKAPVPSDSTGSKDVMDECLLFWKKNNEHDFPFIQNLEAVEDDDDMLFSLMKVSRVATDATFFTEQNCMKLLVSRVEVLKLTLKMEQRKRVSVTVTN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1345 462 SMART serkin_6 16 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1345 462 Gene3D Transferase(Phosphotransferase) domain 1 96 317 - -
Aed1g1345 462 Pfam Protein kinase domain 106 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1345 462 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 103 383 IPR030509 GO:0004672|GO:0005524
Aed1g1345 462 ProSiteProfiles Protein kinase domain profile. 1 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1345 462 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
Aed1g1345 462 PANTHER CASEIN KINASE-RELATED 103 383 - -
Aed1g1345 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1345 Aed-Chr1 12519991 12524478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1345 71 217 AGC Kinase Gene Family AT1G45160 27.059 8.54e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Aed1g1345 Pkinase 5.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1345 K02218 - gmx:100778165 344.354