Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1336 ATGGGTTCGAATAATAATGCAGAAGAAATAAAGTCCACCGTGATCGGCATTGATAGCGACCGGAACAGCCCACACGCGGTCAAATGGACTGTAGAACATCTCTTGAAGAAGAACTCATCTTGCACCCTCATCCACGTCACAACCAATAATAAGAACTTATTGTATCCCCATGATTCTGAGCTTGTCCCTAAACAAGGTCGTCCACCAACTGAAAAAGAATTGCAGCAGTTTTTTCTTCCCTTTCGAGGATTTTGTGCACGAAAAGGGATCGTAGCTAAGGAGTTAGTTCTGCATCACATTGACGTTTCAAAGGCGCTTACTGATTACATAGTTGACAACTCTATCAATAATATTGTTGTCGGCGCTTCCCGCTGGAATGCTCTTATAAGGAAATTTAAAGATGTAGATGTGGCAACAAGCTTAGTGAGGTCTGTGCCAGAGTCTTGCACGGTGCATGTTATATCAAAAGGAAAAGTGTGCGTAAAATCGGTAAAGTATGGAGTTAGCCAAGGCTCAAACAATGATGGGGCATCTCCACAACTATCGGATGAAAGCTGCTCCTCACAAAATTCATCCAATCGAAGTTCCCTCTTTGGTTATCAATTGACTGAGACGTCGTCACATGAAAACCAAGATGCAGTACAGAATTCAATCAGTTACACTTGTAGGAGCAAATCTGAGAAAAGGTCCCAAGTAAGTAATTGGCCTTGCTTGGTTATCTTACTGAAGAGCTTGGAAATAGAAAAAAGGAAACTAGAACAGGAGAGAAAGACAAAGAAGTGTAATTCGACACGTAGGGAAACTACATCAGCAAAACAGAAGGCAATGAAGCATGGAAAGTTTATGCAAGAAGATGATGTAGTTAAAGCTTGGCTTGCTGAAGAGGCTACATTGACTTTGGCAGAGGTAGAAAGGAAGAAAACCAAGGCAGCTATGGAGTCAGCTGAAATGTCAAGATGCCTGGCAGAAATGAAGAGCCAGAAGGGAAAACAAAGTGAAATAAGAGTCATGCATGAGGAAGAAGAGAGGAATAGAGCATTAAATGCAAGTGCACATAACAAAATTCTATTTAAAAGATACAATATTAAAGAAATTGAAGTTGCAACTAATTACTTTGACAATGCCCTCAAAATCGGTGAAGGTGGATATGGACCTGTTTTTAAAGGGGTGCTTGATCACACTGTTGTTGCAATCAAGGCCCTGAAACCAGACATATCCCAAGGGGAGAGGCAGTTTCAACAAGAGATTAATGTTTTGAGCACAATAAGACATCCAAACATGGTTCAACTTCTAGGTGCCTGTCCAGAGTACGGATGCCTTGTATATGAGTACATTGAAAATGGAAGCTTAGAAGATCGGCTTTTCCAAAAAGATAACACTCCAGCAATTCCATGGAAAGTTCGATTCAAAATAGCATCAGAAATTGGCACTGGCCTTCTTTTCCTTCACCAAACAAAGCCTGAGCCGGTTGTGCATCGTGATCTAAAACCAGCAAACATTCTATTGGACCGGAACTATGCGAGCAAGATAACTGATGTGGGTTTGGCAAGGCTAGTTCCTCCTAGTGTACCCAACAAAACCACTCAATACCACAAGACAACAGCAGCTGGTACAATTTGCTACATTGACCCCGAATATCAACAAACGGGACTATTGGGTGTGAAATCAGATATATATTCATTAGGTGTAGTGCTGCTACAGATTATCACTGGAAAGTCTCCTTTGGGTGTGGCACACCTAGTTCAGGAGGCTATAGACAAAGCTGAATTCCCAGAGGTGCTTGATCCAAATGTCACTGATTGGCCCCTTGAAGAGACTCTATCATATGCTAGGTTGGCTTTGAAGTGTTGTGAAATGAAAAAACGGGATAGACCAGACCTTGCTTCTGTCATTTTGCCACATCTTAATAGACTCCGAAATCTGTGA 1926 0.4164 MGSNNNAEEIKSTVIGIDSDRNSPHAVKWTVEHLLKKNSSCTLIHVTTNNKNLLYPHDSELVPKQGRPPTEKELQQFFLPFRGFCARKGIVAKELVLHHIDVSKALTDYIVDNSINNIVVGASRWNALIRKFKDVDVATSLVRSVPESCTVHVISKGKVCVKSVKYGVSQGSNNDGASPQLSDESCSSQNSSNRSSLFGYQLTETSSHENQDAVQNSISYTCRSKSEKRSQVSNWPCLVILLKSLEIEKRKLEQERKTKKCNSTRRETTSAKQKAMKHGKFMQEDDVVKAWLAEEATLTLAEVERKKTKAAMESAEMSRCLAEMKSQKGKQSEIRVMHEEEERNRALNASAHNKILFKRYNIKEIEVATNYFDNALKIGEGGYGPVFKGVLDHTVVAIKALKPDISQGERQFQQEINVLSTIRHPNMVQLLGACPEYGCLVYEYIENGSLEDRLFQKDNTPAIPWKVRFKIASEIGTGLLFLHQTKPEPVVHRDLKPANILLDRNYASKITDVGLARLVPPSVPNKTTQYHKTTAAGTICYIDPEYQQTGLLGVKSDIYSLGVVLLQIITGKSPLGVAHLVQEAIDKAEFPEVLDPNVTDWPLEETLSYARLALKCCEMKKRDRPDLASVILPHLNRLRNL 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1336 641 Coils Coil 242 262 - -
Aed1g1336 641 MobiDBLite consensus disorder prediction 257 278 - -
Aed1g1336 641 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 146 - -
Aed1g1336 641 Pfam Protein kinase domain 376 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1336 641 Gene3D Transferase(Phosphotransferase) domain 1 445 641 - -
Aed1g1336 641 PANTHER OS02G0152300 PROTEIN 12 641 - -
Aed1g1336 641 Pfam Universal stress protein family 12 151 IPR006016 -
Aed1g1336 641 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 12 641 - -
Aed1g1336 641 SUPERFAMILY Protein kinase-like (PK-like) 354 631 IPR011009 -
Aed1g1336 641 MobiDBLite consensus disorder prediction 171 193 - -
Aed1g1336 641 Gene3D Phosphorylase Kinase; domain 1 349 444 - -
Aed1g1336 641 Gene3D HUPs 1 157 IPR014729 -
Aed1g1336 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Aed1g1336 641 SMART serkin_6 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1336 641 CDD STK_N 12 157 - -
Aed1g1336 641 Coils Coil 293 313 - -
Aed1g1336 641 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1336 Aed-Chr1 12454550 12457209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1336 246 641 Receptor kinase-like Gene Family AT5G12000 58.794 3.13e-163 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aed1g1336 Pkinase 4.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1336 - - gmx:100814365 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0345 2 2303669 2307081 Aed1g1336 1 12454550 12457209 PCT