Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1333 ATGGAGGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGCCGTAGAGCTGGCATCATCAAAGCCCTTACCACCGATGTTGAAGATCTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAATGAGCAATGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGCCCTTTCCTTTTATTTTGGAGCTAGATTTGGATATGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCTAACTCTAAAGTGCGGGCTTCTGAAATCCAGGCCAGACAGTCAAAGGCATTACAACCAAAAGATGAGGAGGAAGGACTTGAAGAGAAAGTTGACGATGAACATGGAGATACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTTCATGGCAAATGTGTGAAGATCACCCCTGCTAGAGCAGAGCATATCAAGCAATACAAGTGCCCGTCATGCAGTAACAAGAGAGTTCGCTAA 747 0.4284 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDLYSQCDPEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALSFYFGARFGYDKTDRKRLFSMINELPTIFEVVTGAAKKQVKEKSSVSNNSGSKSKSNSKVRASEIQARQSKALQPKDEEEGLEEKVDDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1333 248 MobiDBLite consensus disorder prediction 141 171 - -
Aed1g1333 248 MobiDBLite consensus disorder prediction 141 186 - -
Aed1g1333 248 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Aed1g1333 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Aed1g1333 248 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 248 - -
Aed1g1333 248 PANTHER CPG BINDING PROTEIN 1 248 IPR045104 GO:0006355|GO:0042393
Aed1g1333 248 SUPERFAMILY FYVE/PHD zinc finger 189 246 IPR011011 -
Aed1g1333 248 Pfam PHD-finger 196 245 IPR019787 -
Aed1g1333 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Aed1g1333 248 CDD PHD_AL_plant 195 245 IPR044104 -
Aed1g1333 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Aed1g1333 248 SMART PHD_3 195 243 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1333 Aed-Chr1 12441718 12445305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1333 6 248 Alfin-like Transcription Factor Family AT3G42790 73.663 3.07e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aed1g1333 Alfin 1.6e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1333 - - gmx:100170696 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0351 2 2369711 2373500 Aed1g1333 1 12441718 12445305 ECH
Aed1g1333 1 12441718 12445305 Aed1g1333 1 12441718 12445305 ECH
Aed1g1333 1 12441718 12445305 Aed2g0351 2 2369711 2373500 PCT